Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0124 ATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACATGCAGTAGCCAAAGCAATGGGGAATCAATTTCTTCTTCATGTATGGGAATTGGATTTCGAGGTCGAAAGCGAACGAAAAGAACATTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATATTCATGAATGGAAAAAGTCGTTCTTCTTGTATTTTCACGCAACAAGGTCGCAAGGGCATAAACCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACGATCTTTTGTGGTGTATTCGATGGACATGGACCTTACGGTCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGACACCTCTAGATTGTGAAGATTCTGAGAAAGATGGTTTTGTAGAGGACTCGCAGAATTCGGTATGGAGAGATGCTTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACACCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGCGACTCAAGAGCAATCCTCGCCTCGAAGGACGCCAATGATTCCACAGTGGCCGTCCAATTGACCGTGGATCTTAAGCCAGATTTACCAAGAGAAGCTGAAAGAATAAACCGGTGTAAAGGTAGGGTCTTTGCATTGCAGGATGAGCCTGAAGTGCCAAGGGTGTGGTTACCTTTCGATGATGCGCCCGGTTTAGCGATGGCTCGAGCATTTGGCGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCCGAATTCTCTCATCGAACCCTCACCGACGCTGATCAGTTCGTCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCAGCCCCAACCCGGGCATCAGCTGCAAGGTCCGTGGTGGACTCGGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCAAAAATGGATGACTGTGCTGTCGTCTGCTTATTTTTGGACGGGAGGATGGACTCTGAATCCGACTGTGATGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACTGCTATCGAGTCCGATGATGGCCAGAGGTCTGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCCGAAGAAAGCAAGGGATTACCTGTCGAAGACAGGGAGGTTGGTGCTGCTGTACCTGCAGAAGATCAAAACTGGTCGGGTTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAACTTCCTAGATTTTCCGAGGAAAGGCCAGTGTCATAG 1416 46.54 MGGCVSTSSHSTCSSQSNGESISSSCMGIGFRGRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFQRNLKTPLDCEDSEKDGFVEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERINRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFVVLASDGVWDVLSNEEVVDIVSSAPTRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGRMDSESDCDEQGFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEESKGLPVEDREVGAAVPAEDQNWSGLEGVTRVNSLVQLPRFSEERPVS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1344607 1346495 + CcPI632755_02g001240.1 Cco02g0124 170881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0124 471 SMART PP2C_4 55 370 IPR001932 -
Cco02g0124 471 Gene3D - 57 374 IPR036457 -
Cco02g0124 471 MobiDBLite consensus disorder prediction 383 445 - -
Cco02g0124 471 MobiDBLite consensus disorder prediction 1 22 - -
Cco02g0124 471 FunFam probable protein phosphatase 2C 52 57 375 - -
Cco02g0124 471 MobiDBLite consensus disorder prediction 383 424 - -
Cco02g0124 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Cco02g0124 471 PANTHER PROTEIN PHOSPHATASE 67 371 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco02g0124 471 Pfam Protein phosphatase 2C 167 349 IPR001932 -
Cco02g0124 471 SUPERFAMILY PP2C-like 56 374 IPR036457 -
Cco02g0124 471 CDD PP2Cc 65 372 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0124 Cco-Chr2:1344607 Cco02g1646 Cco-Chr2:29069297 4.90E-86 dispersed
Cco03g1057 Cco-Chr3:18342714 Cco02g0124 Cco-Chr2:1344607 6.20E-106 transposed
Cco04g0845 Cco-Chr4:24030678 Cco02g0124 Cco-Chr2:1344607 1.50E-92 transposed
Cco10g0361 Cco-Chr10:4223389 Cco02g0124 Cco-Chr2:1344607 5.40E-118 transposed
Cco11g0971 Cco-Chr11:15423598 Cco02g0124 Cco-Chr2:1344607 1.30E-113 transposed
Cco08g0583 Cco-Chr8:15105839 Cco02g0124 Cco-Chr2:1344607 7.20E-109 transposed
Cco02g0124 Cco-Chr2:1344607 Cco02g1866 Cco-Chr2:31524948 4.60E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0124 - - - 0.0