Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0132 | ATGGGTTGGAAAAGATCTTCGAGGAACGGCAATTTGAGGATCTGGGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCCCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGAGAACTTGGGATTGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCCGTTACCATGCAGAACTTTTTTCTTTCAGCTAATGAGTTCACGGGAAGTATTCCGAGTTCATTATCATCTTTGATTCAACTGACAGCGATGTCGTTGAATGATAACAAATTAAGTGGGCAAATACCAGATTCCTTTGAAGCCATTTCTCAATTGGTCAATTTAGACTTGTCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAACATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCATCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCAGAGGAATCCAGTTCTGGAAAAAATAAGAAAAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTTTCCAAGCGACATCAGATAGGTGCTTATAGAGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATTCCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAAGCAGGAAACTCAAACAGAGGTTCAGAAGGTTCCAAAAGATCATGAAGAGAGAAAGAAAAACATGCCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCTCCCCCTCCTCCTCCCCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCCGTGCCCATTGTTCCAGCCGAAGTTCCTCCCTTGAAGCCTCTCACTAAACATAGAATTACCTCAACTTTTGCAAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTCGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTGGTGGAACATTGCAGGATGCACTGCACTCAGATGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTCCATGAGGTCTGTCAGCCTCCTGTTATTCATAGGAATTTCAAGTCTGCGAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCCGGTCAGCTTCTGACAGCATATGGTTACGGAGCGCCAGAATTTGAATCAGGAGTTTATACCCTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAGCTTCTAACTGGCCGGATGTCGTATGACAGAACAAGGACCCGAGGTGAGCAGTTCCTAGTCAGGTGGGCGATTCCACAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACTTGGCAGTGGTTCAAGTGAAGATTGA | 2373 | 45.22 | MGWKRSSRNGNLRIWVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGENLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNFFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGQIPDSFEAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGASPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSKRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPKQETQTEVQKVPKDHEERKKNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPPPPPVEEVTAVPIVPAEVPPLKPLTKHRITSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPLGSGSSED | 790 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1379051 | 1386468 | + | CcPI632755_02g001320.1 | Cco02g0132 | 170889 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 358 | 410 | - | - | |
Cco02g0132 | 790 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 578 | 786 | - | - | |
Cco02g0132 | 790 | Pfam | Leucine Rich Repeat | 148 | 167 | IPR001611 | GO:0005515(InterPro) | |
Cco02g0132 | 790 | Pfam | Leucine Rich Repeat | 172 | 193 | IPR001611 | GO:0005515(InterPro) | |
Cco02g0132 | 790 | Pfam | Leucine Rich Repeat | 101 | 120 | IPR001611 | GO:0005515(InterPro) | |
Cco02g0132 | 790 | Gene3D | Phosphorylase Kinase; domain 1 | 471 | 577 | - | - | |
Cco02g0132 | 790 | ProSiteProfiles | Protein kinase domain profile. | 500 | 778 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 280 | 306 | - | - | |
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 433 | 457 | - | - | |
Cco02g0132 | 790 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 35 | 260 | - | - | |
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 432 | 457 | - | - | |
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 247 | 312 | - | - | |
Cco02g0132 | 790 | Gene3D | Transferase(Phosphotransferase) domain 1 | 579 | 781 | - | - | |
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 255 | 279 | - | - | |
Cco02g0132 | 790 | SUPERFAMILY | Protein kinase-like (PK-like) | 476 | 774 | IPR011009 | - | |
Cco02g0132 | 790 | Gene3D | Ribonuclease Inhibitor | 39 | 256 | IPR032675 | - | |
Cco02g0132 | 790 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 76 | 776 | IPR051420 | - | |
Cco02g0132 | 790 | SUPERFAMILY | L domain-like | 54 | 241 | - | - | |
Cco02g0132 | 790 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 470 | 577 | - | - | |
Cco02g0132 | 790 | Pfam | Protein tyrosine and serine/threonine kinase | 502 | 774 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g0132 | 790 | MobiDBLite | consensus disorder prediction | 383 | 410 | - | - | |
Cco02g0132 | 790 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 445 | 455 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0132 | Cco-Chr2:1379051 | Cco08g0620 | Cco-Chr8:16308947 | 6.00E-105 | dispersed | |
Cco02g0132 | Cco-Chr2:1379051 | Cco04g2060 | Cco-Chr4:34598832 | 1.30E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86543 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-42 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0132 | - | - | - | 0.0 |