Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0137 ATGACAATTTTTTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAAAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGAGAAATTAAATTCTGGGAAGCTGAATGCATTAGGATTGATGCTGCTGACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCCGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGATTTTTTTGAAGAAGATTTAGTTAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCTTAAGAGATGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTTGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGACGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGTCGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGGTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA 1725 42.32 MTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECRKKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECIRIDAADKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAGAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1433958 1438955 + CcPI632755_02g001370.1 Cco02g0137 170894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0137 574 Gene3D - 46 397 - -
Cco02g0137 574 Gene3D - 423 573 - -
Cco02g0137 574 SUPERFAMILY EF-hand 329 456 IPR011992 -
Cco02g0137 574 PANTHER NADH DEHYDROGENASE 42 574 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cco02g0137 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cco02g0137 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491(InterPro)
Cco02g0137 574 Pfam NDH2 C-terminal domain 509 570 IPR054585 -
Cco02g0137 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 573 - -
Cco02g0137 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
Cco02g0137 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cco02g0137 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Cco02g0137 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Cco02g0137 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Cco02g0137 574 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
Cco02g0137 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Cco02g0137 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0137 Cco-Chr2:1433958 Cco02g2084 Cco-Chr2:33745574 1.10E-71 dispersed
Cco02g0137 Cco-Chr2:1433958 Cco02g1852 Cco-Chr2:31421082 6.30E-229 wgd
Cco02g0137 Cco-Chr2:1433958 Cco03g0556 Cco-Chr3:5696472 2.40E-236 wgd
Cco02g0137 Cco-Chr2:1433958 Cco04g2048 Cco-Chr4:34492531 3.00E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0137 K03885 - csv:101203130 1096.26