Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0137 | ATGACAATTTTTTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAAAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGAGAAATTAAATTCTGGGAAGCTGAATGCATTAGGATTGATGCTGCTGACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCCGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGATTTTTTTGAAGAAGATTTAGTTAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCTTAAGAGATGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTTGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGACGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGTCGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGGTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA | 1725 | 42.32 | MTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECRKKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECIRIDAADKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAGAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI | 574 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1433958 | 1438955 | + | CcPI632755_02g001370.1 | Cco02g0137 | 170894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0137 | 574 | Gene3D | - | 46 | 397 | - | - | |
Cco02g0137 | 574 | Gene3D | - | 423 | 573 | - | - | |
Cco02g0137 | 574 | SUPERFAMILY | EF-hand | 329 | 456 | IPR011992 | - | |
Cco02g0137 | 574 | PANTHER | NADH DEHYDROGENASE | 42 | 574 | IPR045024 | GO:0003954(InterPro)|GO:0006116(InterPro) | |
Cco02g0137 | 574 | SUPERFAMILY | FAD/NAD(P)-binding domain | 53 | 272 | IPR036188 | - | |
Cco02g0137 | 574 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 55 | 380 | IPR023753 | GO:0016491(InterPro) | |
Cco02g0137 | 574 | Pfam | NDH2 C-terminal domain | 509 | 570 | IPR054585 | - | |
Cco02g0137 | 574 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 422 | 573 | - | - | |
Cco02g0137 | 574 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 45 | 405 | - | - | |
Cco02g0137 | 574 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 159 | 177 | - | - | |
Cco02g0137 | 574 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 56 | 75 | - | - | |
Cco02g0137 | 574 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 220 | 238 | - | - | |
Cco02g0137 | 574 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 376 | 411 | IPR002048 | GO:0005509(InterPro) | |
Cco02g0137 | 574 | SMART | efh_1 | 380 | 408 | IPR002048 | GO:0005509(InterPro) | |
Cco02g0137 | 574 | SUPERFAMILY | FAD/NAD(P)-binding domain | 219 | 373 | IPR036188 | - | |
Cco02g0137 | 574 | ProSitePatterns | EF-hand calcium-binding domain. | 389 | 401 | IPR018247 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0137 | Cco-Chr2:1433958 | Cco02g2084 | Cco-Chr2:33745574 | 1.10E-71 | dispersed | |
Cco02g0137 | Cco-Chr2:1433958 | Cco02g1852 | Cco-Chr2:31421082 | 6.30E-229 | wgd | |
Cco02g0137 | Cco-Chr2:1433958 | Cco03g0556 | Cco-Chr3:5696472 | 2.40E-236 | wgd | |
Cco02g0137 | Cco-Chr2:1433958 | Cco04g2048 | Cco-Chr4:34492531 | 3.00E-61 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0137 | K03885 | - | csv:101203130 | 1096.26 |