Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0155 ATGGTGTATGTGAAAGCGGAAGGCTATAGAATCGCACCATCTGGACCATCAAAGAACGTGCAATCGACGAAAGTCTTCTGTGGGTCTCTCTTCTTCCAATTAAAAAAGCGAAAGAGAAGTAGTGAAATGGTGGCCAAAAGAAGTGTCAAGAACTTGGTCACCATCAGCTGGTTTGCAGAGGTTTTGACGTCTTTTTTTCTTTTGTACTCATTTGTGTTTTTAATTTCTGTCGTTAATTGCTTTTCTAAAGATATCTTAGAGTTTAAGAGTTGCATAAGTGATGAGAGAGGGGATACTCTTGTATCGGCAGGATCGAGATTCGAACTCGGATTCTTTAAGCCATATGGCAGCTCTCATAGCAGAAGATACTTGGGAATATGGTATTACAAATCAAATCCAAGTACGGTTGTTTGGGTTGCCAATCGAGACAGCCCACTTGCTGGTTCAGATGGTATCTTTAAGATTGAGGATGATGGCAACCTCAAAGTATATGATGGAAATGGGAATCTGTATTGGTCAACAAACATTGGAAGTTCTATACTCGATCGAAGGACTCTGAAGTTATTGGATAATGGAAATCTGGTTTTGAGTTATGCAGATCAAGAAGACTTGTCTGAGCACATCCTCTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCTGGCATGTTAATGGATGATAACTTGGTGCTGACTTCATGGAAGAGCTATGATGACCCTGCTCGAGGGAACTTCACTTTTCAGCTAGATCAAGACGGAGGTCAATATGTCATTTGGAAAAGATCAGTTAAATTCTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCTGCATTGTTATACCTTTTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATATTGATACAAGGCTAGTATTGAACAGCTCAGGTCAGCTTCATTATCTAAACTGGGAAGATCACAAAGTGTGGTCTCAGATTTGGGTGGAGCCAAGAGATAGATGCAGTGTGTATAATGCGTGTGGAGATTTTGCTAGCTGTAATAGTGAGGGTGGTGTAGCTTGCAAATGCCTGCCTGGTTTTGAACCTACCTCTCCAGGGAGTTGGAATACTGGAGATTATTCAGGTGGATGCATTAGGAAATCACCAATATGCAGTGTCAACGATGACAGTGACACTTTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCGGACTTCCAGTTTAATGCGAAGGATGACTTTGATTGCAAATTGGAGTGCCTTAACAACTGCCAGTGTCAGGCTTACTCATATTTGGAAGCTAATACGTCAAGGCAGGGTTCTGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGATGAGTTTGATAATGGCCGTGACCTCAATGTTCGAGTAGCAGTTAGAGATCTAGAATCAACTGTCAGAAACTGTGGAACATGTGGGTCAAACCTCATTCCTTATCCACTTAGCACAGGACCTAAATGTGGTGACCCCATGTACTTCAATTTTAACTGCAATGTGGCTACTGGCCAGGTAAACTTTGAAGCAGCAGGTGGAACATACAAGGTTAAATTCATTGATTCAGAAGCGCGGAAATTTTACATTCAAACCAAGGAAGCTGGTGATTGTGGTGATAAAAATTGGATAACCAAAGCCCTTCAGCTGAACCATTCATCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACCAATTCCGAGAATTTTTCTCTGAAAACCAGCAATGAAGTTGAAATCAGTTGGGAGCCTCCGTTAGAGCCAACTTGTTCTTCAACTACGGACTGCAAAGACTGGCCTTATTCAACTTGCAACATGAGTAAAGATGGAAATAAAAGATGCCTTTGCATAGCAGACTTTCATTGGAATGGCTGGAGCTTGAATTGCACTACAGATCACAACAAAGGAAAGGATGGAAGAGGCAAAACGACCTTCTCTGTGATTATTGTTGCAACATCCATTTGTCTTGTCCTTCTGACGATTCTCTCATGTACTGTGTTTTATATTTACTTCTCCAAAACTGGGCTCATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGATTTAATGCTTCACTTGTACGACAATGAGAGACGTGTCAAAGACCTGATCGAATCGGGTCGATTCAAGGAAGATGATACAAATGGAATAGACATTCCATTTTTTGATTTGGAAACAATTCTAATTGCAACAGAGAACTTCTCAAATGCAAATAAGCTTGGACAAGGAGGCTTTGGGCCAGTTTACAAGGGGAAGTTTCCTAGTGGGCAGGAGATTGCTGTAAAGAGGCTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTGTTAATCGCAAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTACGAATATATGCCAAATAAAAGCTTAGACGCCTTTATATTTGATCAAAAGCTCAGTGTGGCATTGGATTGGGACATCCGCTTCAACGTCATTTTGGGAATTGCTCGTGGCCTCCTTTATTTACACCAAGATTCGAGGTTGAGAATTATTCATAGAGATTTGAAGACGAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCCGACTTTGGCTTGGCGAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAAAAGGGTGGTAGGCACTTATGGATACATGTCACCAGAATATGCATTGGATGGCATATTTTCTGTCAAATCTGACGTCTTTAGCTTCGGTGTAGTCGTAATCGAGATCATTAGTGGAAAAAGGAACACGGGATTCTATCACTTGGAGAAAGCTTTGAGTCTTCTAGGCTATGCTTGGGATTTATGGATGAAAGACGAAGGCTTGGATTTAATGGAGCAAACACTGAGGGGGAACTGCAAAAGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGTTGTGTGTGCAGGAAGATCCATGGGATCGACCCACCATGTCGAATGTGGTCTTCATGCTCGGCAGCGAAACCGCAACTCTTCCATCTCCGAAACCACCAGCTTTCGTCGTACGGCGGTGCCCCTCCAGCAGAGCTTCCTCCTCCACCAAACCAGAAACCTTCTCCCATAATGAGTTGACGGTCACCTTAAAAGATGGTAGATAG 3222 41.93 MVYVKAEGYRIAPSGPSKNVQSTKVFCGSLFFQLKKRKRSSEMVAKRSVKNLVTISWFAEVLTSFFLLYSFVFLISVVNCFSKDILEFKSCISDERGDTLVSAGSRFELGFFKPYGSSHSRRYLGIWYYKSNPSTVVWVANRDSPLAGSDGIFKIEDDGNLKVYDGNGNLYWSTNIGSSILDRRTLKLLDNGNLVLSYADQEDLSEHILWQSFDYPTDTFLPGMLMDDNLVLTSWKSYDDPARGNFTFQLDQDGGQYVIWKRSVKFWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYIDTRLVLNSSGQLHYLNWEDHKVWSQIWVEPRDRCSVYNACGDFASCNSEGGVACKCLPGFEPTSPGSWNTGDYSGGCIRKSPICSVNDDSDTFLSLKMMKAGNPDFQFNAKDDFDCKLECLNNCQCQAYSYLEANTSRQGSACWIWSGDLNNLQDEFDNGRDLNVRVAVRDLESTVRNCGTCGSNLIPYPLSTGPKCGDPMYFNFNCNVATGQVNFEAAGGTYKVKFIDSEARKFYIQTKEAGDCGDKNWITKALQLNHSSPFHVTSWCNFKETNSENFSLKTSNEVEISWEPPLEPTCSSTTDCKDWPYSTCNMSKDGNKRCLCIADFHWNGWSLNCTTDHNKGKDGRGKTTFSVIIVATSICLVLLTILSCTVFYIYFSKTGLIERQESRGNSQKDLMLHLYDNERRVKDLIESGRFKEDDTNGIDIPFFDLETILIATENFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDIRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEIISGKRNTGFYHLEKALSLLGYAWDLWMKDEGLDLMEQTLRGNCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLKDGR 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1580425 1585207 + CcPI632755_02g001550.1 Cco02g0155 170912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0155 1073 Gene3D Transferase(Phosphotransferase) domain 1 831 1033 - -
Cco02g0155 1073 CDD B_lectin 97 216 IPR001480 -
Cco02g0155 1073 Gene3D - 86 213 IPR036426 -
Cco02g0155 1073 Pfam D-mannose binding lectin 135 232 IPR001480 -
Cco02g0155 1073 SUPERFAMILY alpha-D-mannose-specific plant lectins 136 241 IPR036426 -
Cco02g0155 1073 MobiDBLite consensus disorder prediction 1048 1066 - -
Cco02g0155 1073 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 78 213 - -
Cco02g0155 1073 Pfam Domain of unknown function (DUF3403) 1028 1073 IPR021820 GO:0004674(InterPro)
Cco02g0155 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 876 888 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0155 1073 SMART blect_4 89 216 IPR001480 -
Cco02g0155 1073 SUPERFAMILY Protein kinase-like (PK-like) 739 1056 IPR011009 -
Cco02g0155 1073 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 83 1040 - -
Cco02g0155 1073 CDD PAN_AP_plant 395 479 - -
Cco02g0155 1073 Pfam Protein tyrosine and serine/threonine kinase 758 1023 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0155 1073 CDD STKc_IRAK 761 1026 - -
Cco02g0155 1073 ProSiteProfiles Protein kinase domain profile. 755 1033 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0155 1073 Pfam PAN-like domain 395 463 IPR003609 -
Cco02g0155 1073 Gene3D Phosphorylase Kinase; domain 1 720 830 - -
Cco02g0155 1073 MobiDBLite consensus disorder prediction 1048 1073 - -
Cco02g0155 1073 Pfam S-locus glycoprotein domain 267 374 IPR000858 GO:0048544(InterPro)
Cco02g0155 1073 SMART ntp_6 399 478 IPR003609 -
Cco02g0155 1073 SMART serkin_6 755 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0155 1073 ProSiteProfiles Bulb-type lectin domain profile. 85 209 IPR001480 -
Cco02g0155 1073 ProSiteProfiles PAN/Apple domain profile. 395 479 IPR003609 -
Cco02g0155 1073 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 831 1034 - -
Cco02g0155 1073 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 720 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1699 Cco-Chr1:29716306 Cco02g0155 Cco-Chr2:1580425 7.10E-99 dispersed
Cco02g0155 Cco-Chr2:1580425 Cco02g1231 Cco-Chr2:23265474 2.00E-268 dispersed
Cco02g0150 Cco-Chr2:1545803 Cco02g0155 Cco-Chr2:1580425 4.10E-104 proximal
Cco02g0155 Cco-Chr2:1580425 Cco04g2026 Cco-Chr4:34328358 1.90E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86545 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0155 - - - 0.0