Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0178 ATGGAGCTCTTTCGTTGTCTTGTCTTTCTAATTGTATGTGTTCTAGGACTTGCTAGCTCAAGCCAAGCTCAGCTAGAGCTTGGCTACTATGCAAACAGCTGCCCTCGTGCCGAGAAAATCGTCTACGATTACGTTTACAAGAACATTGCCAAGGTCCCTACCTTGGCTTCTGCCTTACTTAGAATGCATTTCCACGACTGTTTTGTTCGGGGTTGTGATGCATCTGTACTCTTGAACTCAACTACGAACAACCAAAGTGAGAAAGTATCTCCACCAAATTTAACACTGAGAGGCTTTGACTTCATTGATAAAATTAAGAAACTTTTGGAAGCTGAATGCCCTGGAGTTATCTCCTGCGCCGACATTATTTCTTTAGTTGCAAGAGACTCCGTCGTTGCTATCGGCGGTCCATTCTGGAGGGTTCCGACCGGAAGGAGAGATGGTTTGATCTCAAGATCCTCAGAAGCTTTGGTGAACATTCCTCCACCGTTTGCCAATTTGTCAACTCTACAACAACAATTCGCTAACAAGGGTCTTGATCTCAAAGACTTGGTTTTGCTTTCAGGAGCGCACACAATTGGGGTATCTCACTGCTCGTCCTTTACGCGGCGGCTCTACAACTTCACCGGCGTGGGAGATCAAGACCCATCACTCGACAGCCAGTACGCCGCAAATCTCAAGGCAAACAAATGCAAAAGCATTAGCGCCAACGGCATTGTGGAAATGGACCCTGGCAGTTTCAAAACCTTCGATCTCAGCTACTACTCCCTTCTTCTGAAGCGCCGAGGGCTGTTCCAGTCCGACGCGGCTCTGACCACCAGCGCAGCCACCAAGGCCTTCGTCACCGACCTGCTCAATGGCTCCGTTCAGAACTTTTTCACCCAGTTTGGGTTAGCCATGGAGAAGATGGGTCGCATAGGGGTCAAGACTGGGTCCGAGGGTGAGATTCGCAACCACTGCGCTTTTCCCGCCATTGCTTTGCAACGAAGGAAAAATCTAAGGCTGCAAAAAAGAGGAGAAATAAAAACCCCTCATCACGGTGTTCGTCCAAGCGGTCGGCGTTTTCCTTCAGATAGCTCACAAAGTTCAGCTCTCTTAATTGACAAGCCATCGAATCTGTTCTATTCTATTATTTTTGCATATTTTCCGATTCTTGGCAATCTTTGTAAGCGAATTTCATCGTCTGAACTACTCCAATTCGGTTCTACATCTATTCTTTCTGATTCGTCGTTGCAAAAAGGCCACTGTTCTCGCCCAAGTTGCTCCTTTGCTCACGGGAACGCTGAACTCAGACGATTTGCTGGTGCTTCTACCGGTAGACAGGAATATAGAGGAAATGATTTAAGGCATAAGCTTGACAGCAGACATTCTCCCCTGCAGGAAAGGGATTCTAGAGGGCGACATGGACCTCGTGTTGCAGAGTATAGCTCATCATGGTCACTTGAACGACATAGTGACCGTAAGAGGAGGAAAAAGGAACTTGGGGATTCCCGTCGTGATTATTCTGGAAATTTGAGGATTTCAGATAGAAATGAAGAAGAAGATAGAGAAGGGAAAACCTCATTTACTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGACAGATATTGAGATGGCTGAGCACCACAAACACCAAGCTGAGGTCTACCTGGACGAGAAAATTCAAGAAGTGGATAGTTTGACTTCTAGAATTCAGGAGCTAGAATCTCAATTATATAAAGAGAGGCAGGAGTGTAGAAGGATCAAATCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTTACTCAAGGTTACATGATGAACTGAAACGATCGCAAGTCCGACTTCAACAATTGGGAGATCAGCTGGGGCCAGATGTTAATAAAATTGGTGCCAATGAAGAAGACTCAAGTATCAATATTGTGAGCGATGGAGAGGACCCTGGTTATCATGCGTCAGGCCCTTTTCATGACCTGCAAAAAGACACTTCTGCAAGCAAGAGGAAGATCCATGCTGTTCAAGATACTGCAGAGAACTCAAATCGAGCTGATTTAAACAAAGGAAATAAAGAGGCAGTGGTGAGAAGGATCTCTCGGTGGAATGCCCATCCTGCTAAATCAGTATATAGCAAAATTGAGGCGGTTGGCAATGAAATCAATGATCTGATACCTACAGCAAACGAAAGCAGGCAGAAGAAGGGAAGGACATCTAGTAGTGTTTCTACTGCGGACAAGGTTAGGGGTCTAGAGTCAGGTGTTGTAGTGCCATTAACCAGCATGGCTGCCCATGCAGTTGATGAGGAAGTTGATATTGACTTGGAAATCAACAATGAAGTGAAAGAACCGAGGGAAAGTACTAAGGAGGCTGCGTCCGGCAGCCTGCCTTTCCTTCCCCCTCCACCACCTCCTCCAATCCGTGAATTCAACCATTCAAGGTATGAGGGTGAAGATCAAAATGTAGATGTGGAGGTGGTTGATGATGAAAGGGAAGGTATGGACGATGCTTAA 2496 45.79 MELFRCLVFLIVCVLGLASSSQAQLELGYYANSCPRAEKIVYDYVYKNIAKVPTLASALLRMHFHDCFVRGCDASVLLNSTTNNQSEKVSPPNLTLRGFDFIDKIKKLLEAECPGVISCADIISLVARDSVVAIGGPFWRVPTGRRDGLISRSSEALVNIPPPFANLSTLQQQFANKGLDLKDLVLLSGAHTIGVSHCSSFTRRLYNFTGVGDQDPSLDSQYAANLKANKCKSISANGIVEMDPGSFKTFDLSYYSLLLKRRGLFQSDAALTTSAATKAFVTDLLNGSVQNFFTQFGLAMEKMGRIGVKTGSEGEIRNHCAFPAIALQRRKNLRLQKRGEIKTPHHGVRPSGRRFPSDSSQSSALLIDKPSNLFYSIIFAYFPILGNLCKRISSSELLQFGSTSILSDSSLQKGHCSRPSCSFAHGNAELRRFAGASTGRQEYRGNDLRHKLDSRHSPLQERDSRGRHGPRVAEYSSSWSLERHSDRKRRKKELGDSRRDYSGNLRISDRNEEEDREGKTSFTSRDTLEGQLNKMQTDIEMAEHHKHQAEVYLDEKIQEVDSLTSRIQELESQLYKERQECRRIKSKIKKFVKAHNRYSRLHDELKRSQVRLQQLGDQLGPDVNKIGANEEDSSINIVSDGEDPGYHASGPFHDLQKDTSASKRKIHAVQDTAENSNRADLNKGNKEAVVRRISRWNAHPAKSVYSKIEAVGNEINDLIPTANESRQKKGRTSSSVSTADKVRGLESGVVVPLTSMAAHAVDEEVDIDLEINNEVKEPRESTKEAASGSLPFLPPPPPPPIREFNHSRYEGEDQNVDVEVVDDEREGMDDA 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1727025 1736772 - CcPI632755_02g001780.1 Cco02g0178 170935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0178 831 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 CDD secretory_peroxidase 24 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g0178 831 SUPERFAMILY Heme-dependent peroxidases 24 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 MobiDBLite consensus disorder prediction 435 530 - -
Cco02g0178 831 MobiDBLite consensus disorder prediction 480 523 - -
Cco02g0178 831 Pfam Peroxidase 44 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 MobiDBLite consensus disorder prediction 339 361 - -
Cco02g0178 831 MobiDBLite consensus disorder prediction 443 470 - -
Cco02g0178 831 Gene3D Peroxidase, domain 2 161 303 - -
Cco02g0178 831 Coils Coil 525 545 - -
Cco02g0178 831 FunFam Peroxidase 28 171 - -
Cco02g0178 831 Gene3D - 29 321 - -
Cco02g0178 831 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 MobiDBLite consensus disorder prediction 816 831 - -
Cco02g0178 831 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0178 831 Coils Coil 553 587 - -
Cco02g0178 831 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cco02g0178 831 MobiDBLite consensus disorder prediction 721 740 - -
Cco02g0178 831 FunFam Peroxidase 161 303 - -
Cco02g0178 831 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 412 829 IPR045868 GO:0046872(InterPro)
Cco02g0178 831 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cco02g0178 831 Coils Coil 598 618 - -
Cco02g0178 831 MobiDBLite consensus disorder prediction 777 831 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0178 Cco-Chr2:1727025 Cco02g0180 Cco-Chr2:1750309 1.10E-99 dispersed
Cco02g0178 Cco-Chr2:1727025 Cco02g0179 Cco-Chr2:1741526 1.90E-101 tandem
Cco09g1651 Cco-Chr9:26979969 Cco02g0178 Cco-Chr2:1727025 5.10E-58 transposed
Cco02g0178 Cco-Chr2:1727025 Cco02g0911 Cco-Chr2:10993993 3.40E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58691 PF00141 peroxidase 1.30E-73 CL0617 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0178 K00430 - csv:101222960 689.108