Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0180 ATGCTTGTATCGTTTCTCTCAAATATTGTCGAAGCGCAAAACTTGACAGTCGGATTTTACCAGGGTAGCTGCCCCGGGGTGGAGTATACTGTTACCAAAACGGTAGCTCTATATATTAAAAAACAACCATCAATAGTTGCTTCTTTATTGAGGATACACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTGATAAATTCTACAATAAACAACCAAGCTGAGAAAGATGCATTTCCCAACCTTAGTTTAAGAGGTTTCAATGTCATTGACGCTGTTAAAGTTGCCGTTGAAAAGCAATGTCCCGGCGTCGTTTCTTGTGCTGATATTCTCGCTTTGATAGCTCGTGATGCAGTTAGAATGATTGGAGGGCCGCTGTGGGAAGTTCCAACAGGAAGAAGAGACGGAAGAGTATCGATCTCCAGAGAAGCGTTGATCAATTTGCCGCCTCCCTTTGCTAATATCTCTTCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTTTCCGTCAAAGATCTGGTAGTTTTATCCGGATCACACACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGCCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCTAAACTAGACAAATACTACGCCGTTGCACTCAAGAACAAATGCAAGCCAAATGACCAGAAAACCACCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCCGCTCTTCTCGACGATCCTGATACCAAAGCTTACGTACTGCTTCAGGCAAGTACACGCGGCGCTACTTTTGCCGCCGATTTCGCTAAATCCATGGTGAATATGGGGAATATCGGTGTGCTCACCGGCACCGACGGCGAAATTAGGCGGCGATGTGCTTTTGTTAACTGA 942 45.97 MLVSFLSNIVEAQNLTVGFYQGSCPGVEYTVTKTVALYIKKQPSIVASLLRIHFHDCFVRGCDGSVLINSTINNQAEKDAFPNLSLRGFNVIDAVKVAVEKQCPGVVSCADILALIARDAVRMIGGPLWEVPTGRRDGRVSISREALINLPPPFANISSLKTSFLSKGLSVKDLVVLSGSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYAVALKNKCKPNDQKTTVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVLLQASTRGATFAADFAKSMVNMGNIGVLTGTDGEIRRRCAFVN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1750309 1752727 - CcPI632755_02g001800.1 Cco02g0180 170937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0180 313 CDD secretory_peroxidase 14 312 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g0180 313 Pfam Peroxidase 32 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
Cco02g0180 313 FunFam Peroxidase 151 292 - -
Cco02g0180 313 PRINTS Plant peroxidase signature 106 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 87 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 24 43 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 48 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Plant peroxidase signature 125 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 ProSiteProfiles Plant heme peroxidase family profile. 14 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601(InterPro)
Cco02g0180 313 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Haem peroxidase superfamily signature 125 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Haem peroxidase superfamily signature 107 124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0180 313 Gene3D Peroxidase, domain 2 151 292 - -
Cco02g0180 313 PANTHER PEROXIDASE 25-RELATED 16 309 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco02g0180 313 Gene3D - 18 313 - -
Cco02g0180 313 FunFam Peroxidase 18 161 - -
Cco02g0180 313 SUPERFAMILY Heme-dependent peroxidases 14 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0178 Cco-Chr2:1727025 Cco02g0180 Cco-Chr2:1750309 1.10E-99 dispersed
Cco02g0180 Cco-Chr2:1750309 Cco02g0911 Cco-Chr2:10993993 1.00E-87 dispersed
Cco02g0179 Cco-Chr2:1741526 Cco02g0180 Cco-Chr2:1750309 3.10E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0180 K00430 - csv:101219177 546.584