Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0183 ATGTTAAGAGTTTTCTCTTTCTCTTGTGGGGGTTGGGGGTGGGAAGATATTGACATGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCGGGAGCTGGGGCAAAAGAATACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAATTCAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTCGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGACCAAATTATGGATCATTGGACCCTTTTAATTAATGATGATGCATTTCCTGCTTTCTCATCCCGATTGCGACATCTAACACATCATTTTTCCGAATATGGTCCTGTATCTGGTCGGTTGGATGTAACAAGCACTAGATATGATATTTGCTGA 552 43.12 MLRVFSFSCGGWGWEDIDMPSFMSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHDQIMDHWTLLINDDAFPAFSSRLRHLTHHFSEYGPVSGRLDVTSTRYDIC 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1764332 1765994 + CcPI632755_02g001830.1 Cco02g0183 170940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0183 183 NCBIfam translation initiation factor SUI1 28 133 IPR005874 GO:0003743(InterPro)
Cco02g0183 183 Gene3D - 18 134 - -
Cco02g0183 183 FunFam Eukaryotic translation initiation factor SUI1 24 135 - -
Cco02g0183 183 SUPERFAMILY eIF1-like 20 134 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco02g0183 183 CDD eIF1_SUI1 51 133 IPR005874 GO:0003743(InterPro)
Cco02g0183 183 ProSiteProfiles Translation initiation factor SUI1 family profile. 53 123 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco02g0183 183 Pfam Translation initiation factor SUI1 50 124 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco02g0183 183 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 23 133 - GO:0003723(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0183 Cco-Chr2:1764332 Cco10g0500 Cco-Chr10:6002603 6.20E-45 dispersed
Cco02g0183 Cco-Chr2:1764332 Cco02g0184 Cco-Chr2:1769830 4.40E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0183 K03113 - csv:101219651 223.787