Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0184 | ATGGCTTACCATGAGCCGTCAGATCAGCTACGCCCTTTGGTTTTACGCTCTTCGTCTCCGGATTCACACCTTTTCTCTTGTTTTGAGGAACTGAATTTAAGAGCCCATAATTTATTTGCTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGAGCAAAAGAGTACGTTCATGTGCGTATACAGCAACGCAACGGGAGAAAAAGTCTGACAACTGTCCAAGGACTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAGAGAAAGAATGTATCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA | 462 | 43.94 | MAYHEPSDQLRPLVLRSSSPDSHLFSCFEELNLRAHNLFAGYLCSTPDSQVSYPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1769830 | 1771692 | + | CcPI632755_02g001840.1 | Cco02g0184 | 170941 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0184 | 153 | NCBIfam | translation initiation factor SUI1 | 50 | 153 | IPR005874 | GO:0003743(InterPro) | |
Cco02g0184 | 153 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 71 | 141 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cco02g0184 | 153 | FunFam | Eukaryotic translation initiation factor SUI1 | 45 | 153 | - | - | |
Cco02g0184 | 153 | CDD | eIF1_SUI1 | 69 | 152 | IPR005874 | GO:0003743(InterPro) | |
Cco02g0184 | 153 | Pfam | Translation initiation factor SUI1 | 68 | 142 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cco02g0184 | 153 | SUPERFAMILY | eIF1-like | 30 | 153 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cco02g0184 | 153 | Gene3D | - | 43 | 153 | - | - | |
Cco02g0184 | 153 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 52 | 153 | - | GO:0003723(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0184 | Cco-Chr2:1769830 | Cco10g0500 | Cco-Chr10:6002603 | 1.00E-40 | dispersed | |
Cco02g0183 | Cco-Chr2:1764332 | Cco02g0184 | Cco-Chr2:1769830 | 4.40E-51 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0184 | K03113 | - | csv:101219651 | 202.986 |