Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0184 ATGGCTTACCATGAGCCGTCAGATCAGCTACGCCCTTTGGTTTTACGCTCTTCGTCTCCGGATTCACACCTTTTCTCTTGTTTTGAGGAACTGAATTTAAGAGCCCATAATTTATTTGCTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGAGCAAAAGAGTACGTTCATGTGCGTATACAGCAACGCAACGGGAGAAAAAGTCTGACAACTGTCCAAGGACTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAGAGAAAGAATGTATCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA 462 43.94 MAYHEPSDQLRPLVLRSSSPDSHLFSCFEELNLRAHNLFAGYLCSTPDSQVSYPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1769830 1771692 + CcPI632755_02g001840.1 Cco02g0184 170941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0184 153 NCBIfam translation initiation factor SUI1 50 153 IPR005874 GO:0003743(InterPro)
Cco02g0184 153 ProSiteProfiles Translation initiation factor SUI1 family profile. 71 141 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco02g0184 153 FunFam Eukaryotic translation initiation factor SUI1 45 153 - -
Cco02g0184 153 CDD eIF1_SUI1 69 152 IPR005874 GO:0003743(InterPro)
Cco02g0184 153 Pfam Translation initiation factor SUI1 68 142 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco02g0184 153 SUPERFAMILY eIF1-like 30 153 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco02g0184 153 Gene3D - 43 153 - -
Cco02g0184 153 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 52 153 - GO:0003723(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0184 Cco-Chr2:1769830 Cco10g0500 Cco-Chr10:6002603 1.00E-40 dispersed
Cco02g0183 Cco-Chr2:1764332 Cco02g0184 Cco-Chr2:1769830 4.40E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0184 K03113 - csv:101219651 202.986