Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0186 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCGATGATCGGAAGAAACGGAAGTGTTGGGATGTTTGGGTCTCCAGGCAGCCTTGTTCTTGGTCAGGAAATACAAGGACTGGAAATGGGAGAAAATGAATATGGGAGAATGAGAGAAACAGAAGAATTTGAGAGTGGAACAAAATCAAGTAGCGAGAACCACGAGGTTGGTTCCGGTGACGACCAACTCAACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGCGACATGAAAACACCCAGCTCCGAACAGAAAATGAGAAGCTTAGAGCAGATAATATGAGATATAGAGAAGCTCTTAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCAATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCCACACCAATTCCTTCACGTCCTCTAGAACTTGGAATGGGAGGCTATGGAGGCCACGATTCCGGCGGGGACATGTACGGGGCAGCGGACCTTCTCCGGACCATAAGCGCCCCATCGGAAGCCGACAAGCCGATAATTATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCTTTGTGGATGACAGGGCTTGATGGCTCAACGGCTGTGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCTAAGCCCTCTGGGTTCAGTTGTGAAGCTTCCCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTAATGGATGTGAATCAATGGTCAACAATATTCAGTGGGATTGTGTCGAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTACAAGTGCCTTCACCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTCGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCCCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAGATGCCCAATGGCTATTCTAAGGTTACCTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTCCACAGTTTATACAACCAGCTAGTTAGCTCCGGCCACGCGTTCGGCGCGAGGCGTTGGATTGCCACGTTGGATCGTCAATGTGAACGGCTTGCCAGTGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCAACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACAAGAAAGAGTGTTGACGATCCCGGCAGACCTCCCGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTTCCTCTTCCTCCCGACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGCGACACGGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCAGTGGACATTGTGTCCATCAACGTCGTACTAAACGGCGGAGATCCTGATTACGTGGCCCTTCTCCCCTCCGGATTCGCCATTCTTCCCGATGGAACCACTGCGTCCAGCGGCGGCGCTGCCAATGGGGTGGCTGAACATGGGTCCGCCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGGTTCCCACAGCAAAACTATCTCTTGGAGAATTAAAGCCTCTTTGTCATGTGATAATCCTTGAACCCCTCACTCTCAACTTCGCAACCTCAGAAGGAGAAAAATGA 2265 48.87 MPAGMMIPARNTASSMIGRNGSVGMFGSPGSLVLGQEIQGLEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGGYGGHDSGGDMYGAADLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTGLDGSTAVLNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGARRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPLPPDRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGTTASSGGAANGVAEHGSAGSLLTVAFQILVDSVPTAKLSLGELKPLCHVIILEPLTLNFATSEGEK 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1784621 1791589 - CcPI632755_02g001860.1 Cco02g0186 170943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0186 754 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco02g0186 754 MobiDBLite consensus disorder prediction 53 90 - -
Cco02g0186 754 FunFam Homeobox-leucine zipper protein HDG1 70 156 - -
Cco02g0186 754 CDD homeodomain 83 141 IPR001356 GO:0003677(InterPro)
Cco02g0186 754 CDD START_ArGLABRA2_like 266 490 - -
Cco02g0186 754 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cco02g0186 754 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Cco02g0186 754 Pfam START domain 272 491 IPR002913 GO:0008289(InterPro)
Cco02g0186 754 Coils Coil 146 166 - -
Cco02g0186 754 ProSiteProfiles START domain profile. 262 494 IPR002913 GO:0008289(InterPro)
Cco02g0186 754 SUPERFAMILY Bet v1-like 510 725 - -
Cco02g0186 754 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 732 IPR042160 -
Cco02g0186 754 Gene3D - 68 157 - -
Cco02g0186 754 Gene3D - 306 486 IPR023393 -
Cco02g0186 754 SMART START_1 271 491 IPR002913 GO:0008289(InterPro)
Cco02g0186 754 SMART HOX_1 81 144 IPR001356 GO:0003677(InterPro)
Cco02g0186 754 SUPERFAMILY Bet v1-like 264 493 - -
Cco02g0186 754 FunFam Homeobox-leucine zipper protein GLABRA 2 271 490 - -
Cco02g0186 754 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0186 Cco-Chr2:1784621 Cco06g0006 Cco-Chr6:87865 2.90E-213 dispersed
Cco02g0186 Cco-Chr2:1784621 Cco02g0929 Cco-Chr2:11258484 0.00E+00 wgd
Cco02g0186 Cco-Chr2:1784621 Cco03g0485 Cco-Chr3:5088180 5.50E-249 wgd
Cco02g0186 Cco-Chr2:1784621 Cco04g1995 Cco-Chr4:34122675 4.50E-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58692 PF01852 START 1.30E-57 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0186 K09338 - csv:101219415 1371.68