Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0189 ATGGTTAATTTTGTTGCTCTGCCGCTGCTGCTATATACTTTGATATGGCTGTTTCAGTTCACCGGTCCGATCTGCTGCCAAAAACCTTCTGTGGTAAACATTGGGGCGGTTTTTACTTTCAATTCCGTCATCGGCAGAGCAGCAAAGCCGGCCATGGAAGCAGCAATCTCCGACATAAACGCCGACCCCAATATCTTGAATGGCATAAAGCTTAACTTCCTCATGGAAGACTCTAATTGTAGTGGCTTCCTGGGCTCCGTTGAAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAAATTGTTAATGGTTTACAAATTCCTCAAGTATCCTATGCTGCTACTGATCCAACATTATCCACTCTGCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGACTGCCATGGCTGATTTGATTGATTACTATGGCTGGAAAGAGGTCATTGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTTTCTGGGAGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCTTTGCCTTCTCTGACCAATCTAACTAAGATCACACAAATACTTAACGATTCTAAATTGCTTGGTCCTCGTGTTTATGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATTGCTCATAAACTTGGTATGCTTACAAGCAATTACGTTTGGTTCGCAACCGATTGGCTTTCTACAACGCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTCGATATACTTAACGGAGTCGTGGGGTTGCGCCCTCGTACTCCAGAGTCTAAACGAAAGACGGATTTGTGGGATCGGTTGAGCAAAACGCAGCCAAAAGGTTTGACCAATTCTGTGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCGAAGGCAGTGGATAAGTTTCTCAAAGAAAATGGGAATATCATAACATTTTCATCCACAGGTAAAGTGTTTGGCTCTAATGGAAGTGGAATTCAATTGGGTAAGCTTAAAGTGTTTGATGGAGGAAGTGATTTGCTTAGAATTATTAAGCAAACAGATTACAGAGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAGTGTTGTAAATGGTAGCTATGATGTGATTAATATTAACCAAAGGGAAATTCGTTTGGTGGGTTATTGGTCTAATGACTCAAGATTTCATTCCCACTTAGATCAAAAACTTGAGAACGTGGTTTGGCCTGGTGGGAAGTCAGAAATACCAAGGGGTTGGGTCATTGCAGATGCTGGAAAGCCTCTGAGAATTGCTTTCCCAAAAAGAGCAAGCTTTGTTGATTTCGTAACTCAATTGAACAACTCCAATATAGTTCGAGGATACGTTATCGATATATTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAATTTGTGCCTTTTGGGGATGGTAGAGTCAATCCAAGTTATGATGAACTTGTTCAGTCAGTTGCAAATAATGTGTTTGATGGAGCTGTTGGGGACATTGCTATTGTTACGAACCGAACAAAGATTGTCGATTTTTCCCAACCGTATACGACTACGGGGCTTATCATAGTTGCACCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGCAACAGCAGGTTCGTTTGTGGTAATTGGGATTGTTATTTGGATGTTAGAACATCGAATCAACGACCATTTTCGAGGTCCTCCGAAAAGGCAGATTGTCACTATGTGTTTATTCAGCTTTTCAACTCTATTCAAGGCAAATCAAGAAGCAACAATAAGCCCACTTTCTCGATTGGTGATGTTGGTATGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTCTTCTCCAATACGTGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTATGACTATCTCACACAAAGCCTTTTCATACCACGTTCCAGACTGGTGAAGCTGGACACCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGAGGTGTGGCAGCCATCATTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACTAAAGAATTTGGAATGATTGGCCAACCTTTTACAAGGAGTGGATGGGGATTTGCTTTCCAGCGAGGATCTCGACTTGCAGTTGATATGTCAACTGCAATTCTGAGACTCTCCGAGAGCGGGAAACTTCAAGAAATACACGACTTGTGGTTCTGTAAGCTAGGTTGTCCGGGGGATCGGGGAGGAAAGTCAGAGCCAGACCAACTTCGGTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTTGCTGCACTCTTCCTGTTTCTATTAAGACTAATTCACCAGTATATCCGTTATCAAAGACACCATCAGCGTCGTCGTTCAGAGGAAGCTACACCATTGCCTGTTCCATCGAACACCAGCTGTACTCAGACCATTCAAAACTTTATAGGGTTTATTGACGAGAAGGAAGAAGCCATCAAGAGCTTCTTCCTACATGGTGCTCAAAATGAGAACCAACTCCACAATCATTCCCAAAATGCCAAGGAGAAGGCCGATTCAGAGATACAGCTAGGGACCTCGAGTATGAATCGAGGATAA 2790 41.86 MVNFVALPLLLYTLIWLFQFTGPICCQKPSVVNIGAVFTFNSVIGRAAKPAMEAAISDINADPNILNGIKLNFLMEDSNCSGFLGSVEALQVLEKEIVAMIGPQSSVVAHVISQIVNGLQIPQVSYAATDPTLSTLQLPFFLRTTLSDSYQMTAMADLIDYYGWKEVIAIFLDDDYGRNGISFLGDELQKKMCRISHEFPLPSLTNLTKITQILNDSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLSTTLDSSSPITNGASLDILNGVVGLRPRTPESKRKTDLWDRLSKTQPKGLTNSVLNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSSTGKVFGSNGSGIQLGKLKVFDGGSDLLRIIKQTDYRGLSGRIQFGEDRSVVNGSYDVININQREIRLVGYWSNDSRFHSHLDQKLENVVWPGGKSEIPRGWVIADAGKPLRIAFPKRASFVDFVTQLNNSNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGRVNPSYDELVQSVANNVFDGAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIVTMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLSSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLDTPEDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGMIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSESGKLQEIHDLWFCKLGCPGDRGGKSEPDQLRLISFWGLYLLCGIISLAALFLFLLRLIHQYIRYQRHHQRRRSEEATPLPVPSNTSCTQTIQNFIGFIDEKEEAIKSFFLHGAQNENQLHNHSQNAKEKADSEIQLGTSSMNRG 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1813874 1819779 - CcPI632755_02g001890.1 Cco02g0189 170946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0189 929 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Cco02g0189 929 PIRSF IGluLR_plant 1 928 IPR017103 -
Cco02g0189 929 MobiDBLite consensus disorder prediction 905 929 - -
Cco02g0189 929 Gene3D - 745 804 - -
Cco02g0189 929 Gene3D - 459 567 - -
Cco02g0189 929 Gene3D - 568 700 - -
Cco02g0189 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 878 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco02g0189 929 FunFam Glutamate receptor 147 307 - -
Cco02g0189 929 SUPERFAMILY Periplasmic binding protein-like II 435 797 - -
Cco02g0189 929 SUPERFAMILY Periplasmic binding protein-like I 25 449 IPR028082 -
Cco02g0189 929 Gene3D - 51 399 - -
Cco02g0189 929 Gene3D - 147 422 - -
Cco02g0189 929 SMART GluR_14 456 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0189 929 FunFam Glutamate receptor 694 801 - -
Cco02g0189 929 Pfam Bacterial extracellular solute-binding proteins, family 3 470 576 IPR001638 -
Cco02g0189 929 FunFam Glutamate receptor 568 698 - -
Cco02g0189 929 MobiDBLite consensus disorder prediction 915 929 - -
Cco02g0189 929 Pfam Ligand-gated ion channel 798 829 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0189 929 CDD GluR_Plant 455 797 - -
Cco02g0189 929 FunFam Glutamate receptor 452 568 - -
Cco02g0189 929 Pfam Receptor family ligand binding region 48 408 IPR001828 -
Cco02g0189 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cco02g0189 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 236 259 - -
Cco02g0189 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0189 Cco-Chr2:1813874 Cco02g0940 Cco-Chr2:11448201 0.00E+00 dispersed
Cco08g1647 Cco-Chr8:27949165 Cco02g0189 Cco-Chr2:1813874 3.60E-18 transposed
Cco02g0189 Cco-Chr2:1813874 Cco02g0936 Cco-Chr2:11346367 1.60E-242 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0189 K05387 - csv:101203158 1620.52