Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0207 | ATGGCCTGGACCCGACGATCCGCCGTCGGAAACGGCTCATCCGCCACCGTCTACCTCGCCTCCATCGCCTCCTCCGGCGAGATATTCGCCGTCAAGTCCGTCGAGCTTCTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTTTCCCACCCTTCAATTGTGGGCTACAGGGGATTCGATGTAACGACAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCCGCCGGTGGCACTCTCACCGAAGAAATTGTTCGACGCGGCGGCAGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGTTTGGAGTACTTGCACAAACAGGGCTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGTTGCTCCAAATGGGTTTCTGAGACGGAGGCGGTAATCGGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATATGGGCACTTGGGTGTACTTTAATCGAAATGGTCACCGGCGCTCCACCATGGCCCATCTCCGGCGACCCTGTTTCGGTGTTGTACCGGATCAGATATTCCGGCGAATCGCCGGCAATTCCAAGTTTTCTATCGGAGAGAGCGAAGGATTTTTTAAGGAAATGCTTGAGAACGGACCCAACAGAAAGATGGAGCGCGAATCAACTTCTTGAACATCCATTTTTTGGGGAATTGAGTTCTGGGTTGGAGGAAATCAAGGAATTACATCCACATTCGGAATCTCCGACGAGTATTTTGGATCAAAGCCTCTGGAATTCGTTAGAAGAAGAATCAGAAACTCTGTTGAAAACAGAGCAATGGGAAGACGACGATGACCACGACGACGACAGAATCAAAGGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGACGAGAATTGGATCACAATCAGAAGCTGTGTAGATAGTGAAGATGAAGAAGAATCCAATTTTAGAAGAAATGATTTAGACTTAGTGGAACAGGAAAGAATAGGTAGTGGGAAAATCCAGTGTTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGAAAAGTAATATTCTAATTAGTGAAATTAGTACCAACATTGGACAAATCTAA | 1185 | 46.75 | MAWTRRSAVGNGSSATVYLASIASSGEIFAVKSVELLKSDFLKTEQRILSSLSHPSIVGYRGFDVTTENGKLMYNLFMEYAAGGTLTEEIVRRGGRIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVSETEAVIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIRYSGESPAIPSFLSERAKDFLRKCLRTDPTERWSANQLLEHPFFGELSSGLEEIKELHPHSESPTSILDQSLWNSLEEESETLLKTEQWEDDDDHDDDRIKGLAMFSGEIKWELGDENWITIRSCVDSEDEEESNFRRNDLDLVEQERIGSGKIQCLELLDKTVSFRVRKSNILISEISTNIGQI | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2013284 | 2014468 | - | CcPI632755_02g002070.1 | Cco02g0207 | 170964 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0207 | 394 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 293 | IPR011009 | - | |
Cco02g0207 | 394 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 253 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco02g0207 | 394 | SMART | serkin_6 | 3 | 253 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g0207 | 394 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524(InterPro) | |
Cco02g0207 | 394 | ProSiteProfiles | Protein kinase domain profile. | 3 | 253 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g0207 | 394 | Pfam | Protein kinase domain | 5 | 253 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g0207 | 394 | CDD | STKc_MAPKKK | 3 | 253 | - | - | |
Cco02g0207 | 394 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 312 | - | - | |
Cco02g0207 | 394 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 121 | 133 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0207 | Cco-Chr2:2013284 | Cco04g1445 | Cco-Chr4:29883571 | 8.30E-55 | dispersed | |
Cco09g1096 | Cco-Chr9:10472057 | Cco02g0207 | Cco-Chr2:2013284 | 6.20E-86 | transposed | |
Cco02g0207 | Cco-Chr2:2013284 | Cco02g0982 | Cco-Chr2:12165047 | 2.60E-96 | wgd | |
Cco02g0207 | Cco-Chr2:2013284 | Cco04g1964 | Cco-Chr4:33934069 | 3.70E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86546 | PF00069 | Pkinase | 9.50E-59 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0207 | K20716 | - | csv:101205351 | 626.706 |