Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0207 ATGGCCTGGACCCGACGATCCGCCGTCGGAAACGGCTCATCCGCCACCGTCTACCTCGCCTCCATCGCCTCCTCCGGCGAGATATTCGCCGTCAAGTCCGTCGAGCTTCTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTTTCCCACCCTTCAATTGTGGGCTACAGGGGATTCGATGTAACGACAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCCGCCGGTGGCACTCTCACCGAAGAAATTGTTCGACGCGGCGGCAGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGTTTGGAGTACTTGCACAAACAGGGCTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGTTGCTCCAAATGGGTTTCTGAGACGGAGGCGGTAATCGGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATATGGGCACTTGGGTGTACTTTAATCGAAATGGTCACCGGCGCTCCACCATGGCCCATCTCCGGCGACCCTGTTTCGGTGTTGTACCGGATCAGATATTCCGGCGAATCGCCGGCAATTCCAAGTTTTCTATCGGAGAGAGCGAAGGATTTTTTAAGGAAATGCTTGAGAACGGACCCAACAGAAAGATGGAGCGCGAATCAACTTCTTGAACATCCATTTTTTGGGGAATTGAGTTCTGGGTTGGAGGAAATCAAGGAATTACATCCACATTCGGAATCTCCGACGAGTATTTTGGATCAAAGCCTCTGGAATTCGTTAGAAGAAGAATCAGAAACTCTGTTGAAAACAGAGCAATGGGAAGACGACGATGACCACGACGACGACAGAATCAAAGGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGACGAGAATTGGATCACAATCAGAAGCTGTGTAGATAGTGAAGATGAAGAAGAATCCAATTTTAGAAGAAATGATTTAGACTTAGTGGAACAGGAAAGAATAGGTAGTGGGAAAATCCAGTGTTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGAAAAGTAATATTCTAATTAGTGAAATTAGTACCAACATTGGACAAATCTAA 1185 46.75 MAWTRRSAVGNGSSATVYLASIASSGEIFAVKSVELLKSDFLKTEQRILSSLSHPSIVGYRGFDVTTENGKLMYNLFMEYAAGGTLTEEIVRRGGRIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVSETEAVIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIRYSGESPAIPSFLSERAKDFLRKCLRTDPTERWSANQLLEHPFFGELSSGLEEIKELHPHSESPTSILDQSLWNSLEEESETLLKTEQWEDDDDHDDDRIKGLAMFSGEIKWELGDENWITIRSCVDSEDEEESNFRRNDLDLVEQERIGSGKIQCLELLDKTVSFRVRKSNILISEISTNIGQI 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2013284 2014468 - CcPI632755_02g002070.1 Cco02g0207 170964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0207 394 SUPERFAMILY Protein kinase-like (PK-like) 6 293 IPR011009 -
Cco02g0207 394 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 253 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco02g0207 394 SMART serkin_6 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0207 394 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cco02g0207 394 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0207 394 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0207 394 CDD STKc_MAPKKK 3 253 - -
Cco02g0207 394 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Cco02g0207 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0207 Cco-Chr2:2013284 Cco04g1445 Cco-Chr4:29883571 8.30E-55 dispersed
Cco09g1096 Cco-Chr9:10472057 Cco02g0207 Cco-Chr2:2013284 6.20E-86 transposed
Cco02g0207 Cco-Chr2:2013284 Cco02g0982 Cco-Chr2:12165047 2.60E-96 wgd
Cco02g0207 Cco-Chr2:2013284 Cco04g1964 Cco-Chr4:33934069 3.70E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86546 PF00069 Pkinase 9.50E-59 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0207 K20716 - csv:101205351 626.706