Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0208 | ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCCACGATTCTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGGTTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGGATAAAAAACGAGAGAGCAGTTCTTCAGGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCAACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGGGAGCGGTCCCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAATAACAACAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGGTCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCAGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACGGTCACATTGGACCTAACTCAAAACTCTAATCCTTTATTCCAACGCCCGACCACGGGTCACTTTCCGATCCCGTTTGCGGCCGGTCCGCCACAAAGCTTCCCGCAGATCTTCGGACATGCATTATACAATCAATCCAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCGGCAGGTGTAGCAATCGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATTGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA | 1623 | 49.17 | MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPHDSLPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQSSNWGSNNNNNNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNSNPLFQRPTTGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2028161 | 2031345 | - | CcPI632755_02g002080.1 | Cco02g0208 | 170965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0208 | 540 | Pfam | WRKY DNA -binding domain | 302 | 359 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cco02g0208 | 540 | Gene3D | WRKY domain | 285 | 362 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 517 | 540 | - | - | |
Cco02g0208 | 540 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 40 | 47 | - | - | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 182 | 197 | - | - | |
Cco02g0208 | 540 | FunFam | probable WRKY transcription factor 31 | 285 | 362 | - | - | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 212 | 294 | - | - | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 170 | 197 | - | - | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - | |
Cco02g0208 | 540 | SUPERFAMILY | WRKY DNA-binding domain | 293 | 361 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0208 | 540 | Coils | Coil | 119 | 153 | - | - | |
Cco02g0208 | 540 | ProSiteProfiles | WRKY domain profile. | 295 | 361 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0208 | 540 | SMART | WRKY_cls | 300 | 360 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 213 | 278 | - | - | |
Cco02g0208 | 540 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 109 | 521 | IPR044810 | GO:0003700(InterPro) | |
Cco02g0208 | 540 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0208 | Cco-Chr2:2028161 | Cco06g1839 | Cco-Chr6:28658087 | 8.80E-39 | dispersed | |
Cco02g0208 | Cco-Chr2:2028161 | Cco04g1962 | Cco-Chr4:33908900 | 4.10E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58694 | PF03106 | WRKY | 2.50E-24 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0208 | - | - | - | 0.0 |