Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0208 ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCCACGATTCTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGGTTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGGATAAAAAACGAGAGAGCAGTTCTTCAGGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCAACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGGGAGCGGTCCCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAATAACAACAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGGTCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCAGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACGGTCACATTGGACCTAACTCAAAACTCTAATCCTTTATTCCAACGCCCGACCACGGGTCACTTTCCGATCCCGTTTGCGGCCGGTCCGCCACAAAGCTTCCCGCAGATCTTCGGACATGCATTATACAATCAATCCAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCGGCAGGTGTAGCAATCGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATTGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA 1623 49.17 MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPHDSLPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQSSNWGSNNNNNNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNSNPLFQRPTTGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2028161 2031345 - CcPI632755_02g002080.1 Cco02g0208 170965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0208 540 Pfam WRKY DNA -binding domain 302 359 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0208 540 MobiDBLite consensus disorder prediction 1 58 - -
Cco02g0208 540 Gene3D WRKY domain 285 362 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0208 540 MobiDBLite consensus disorder prediction 517 540 - -
Cco02g0208 540 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 47 - -
Cco02g0208 540 MobiDBLite consensus disorder prediction 182 197 - -
Cco02g0208 540 FunFam probable WRKY transcription factor 31 285 362 - -
Cco02g0208 540 MobiDBLite consensus disorder prediction 212 294 - -
Cco02g0208 540 MobiDBLite consensus disorder prediction 170 197 - -
Cco02g0208 540 MobiDBLite consensus disorder prediction 31 55 - -
Cco02g0208 540 SUPERFAMILY WRKY DNA-binding domain 293 361 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0208 540 Coils Coil 119 153 - -
Cco02g0208 540 ProSiteProfiles WRKY domain profile. 295 361 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0208 540 SMART WRKY_cls 300 360 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0208 540 MobiDBLite consensus disorder prediction 213 278 - -
Cco02g0208 540 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 521 IPR044810 GO:0003700(InterPro)
Cco02g0208 540 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0208 Cco-Chr2:2028161 Cco06g1839 Cco-Chr6:28658087 8.80E-39 dispersed
Cco02g0208 Cco-Chr2:2028161 Cco04g1962 Cco-Chr4:33908900 4.10E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58694 PF03106 WRKY 2.50E-24 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0208 - - - 0.0