Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0224 ATGAGCCCTCGATTTGGGTTTTTGTTGTTGTTTTTGTTCTCTGTTTTACTGGGAGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTAGGTTCGTACTTTGTGTGGGAGGGTAGTACTTTGTCTCTCATCTCTCAAATGTTTCGGTTGCCGTCTCCTGATATAATCGTCAGCTACAATAGAGATAAAATTCCCAACAAAGACAGTGTTAATAGCGGCATCAGAATCAACGTTCCATTCTCCTGTGACTGTATTAGCGATACGTTTCTGGGTCATACGTTTCAGTACCAGATTAATAGTGGAGATACTTACAGTGAAATTGCGACCAAATTCTATTCGAACCTGACTACGGTGGACATGTTACAAAAATTCAATAATTTTGATGTTCTTAATCTTCCTCCAAATGGTATTTTGAATGTGGTAGTGAACTGCTCCTGTGGGAATCCTGATGTTTCCAAGACATATGGGCTGTTTGTCACTTACCCAATTCGATCCGATGATAGTTGGGATAAGTTGCAAACAGATACAAATGTCAGCTTGTCTTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCCCAGGGAATTTGATCTTTATTCCAGGCAGAGATAAAAGTGGCAACTATCCACCTCTGAATATTAGGACTTGCAGGAGAAAGTCGAAAAGTTCTAAATTGCTGGCGTTCTCCCAAGAACTGTCTTCTCAAGATGGGCGCGCTCTTGCCCCTGGAAGTTCGTTAGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTATAGCTGCCGTTACCGGTATTACTGTGGACAAATCAGTGGATTTCTCATATGAAGAACTTGCCAAGGCCACGGACAACTTTAGCTTGGCTAACAAAATCGGTGAAGGTGGTTTCGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGACATGCAAGCTTCAAGGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACTTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTACATTGAGAATGGCAACTTGAGCCAACATTTACGTGGCACTGGTCGGGATCCATTGCCGTGGCCTTCTAGGGTCCAAATAGCCCTCGATTCAGCTCGTGGCCTTGAGTATATCCATGAGCACACTGTTCCTGTTTATATTCATCGTGATATTAAATCCGCCAACATATTGATTGACAAAAATTTTCATGGAAAGGTTGCAGACTTTGGGCTAACCAAGTTAACTGAAGTTGGAAATTCTTCGCTTCCTACTCGTCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCACAGTACGGTGATGTTTCTCCAAAGATCGATGTATATGCTTTTGGTGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTTAAGACGAACAAAACCAGTGCAATCAATGAATCAAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAATCAACCCGACGCAAAAGAGAACCTTCACAAACTAGTCGACCCAAGACTCGAAGAGAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAACTTGCCAAGGCATGTACACATGAGAATCCACAGCTACGGCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCAACAGAGGATTGGGACGTCGGCTCTTTCTATGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGTGCGACGGAAGAAGATGGCGCTCCTTCAAACGCGGCAGAGGCAACAACTCGACCAGAAGAACTACCCTCTTTCAGCATAAATGATTTGTTGTCACTACCACAGGAGACCAAGGATGCATTGGTTGAAATATTAAAAGGTGATAGCTGTCCGACTGCTTCTACTTCTCAAGCAGACACATGCGCTTCATGTTGTATAGCGATATCATTCACCGACGAAGATTTGTTACTCGGATCAAAACTTCATAATAGACCTTTATTTGTGTCTGGATATATTCGAGAGCAAAAGTTTAGTCGGATCCTCATTGATGATGGATCAGCTGCCAACATAATGCCAAAATCGACTATGAACGAGTTAGGCATTTCGATGGATGAATTATCCACCAGCAAGCTGCCGCCAGAGCCTCTTCACCCGACAGTAGCTTCATGGCCGTTTGAAGCTTGGGGACTTGATCTGGTAGGACCTATAACACCTAAGTCGTCGAGCGGACACTCTTATATTCTTGCTGGAACAGATTACTTTTCAAGGTGGGCTGAAGCTGTGCCTTTGAGGGAAGCAAAAAAAGAAAACATCGTAAGTTTTGTGCGTACGCACATCATTTATCGATACGGGATCCCTCATCGTATTGTCACAGATAATGGAAGACAGCTTGTCAACAGCCTGATGGACAAATTGTGCGAAAAGTTTAAATTTAAGCAGTACAAGTCTTCTATGTACAATGCCGCAGTGAATGGACTAGCAGAAGCATTCAATGAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCTAAAACGAAAAGAGATTGGCAGGAAAAGATCGGGGAAGTCCTATGGGCTTACCGAACTACCCACCGCACTCCCACAGGAGTCACACCATACTTTCTGGTTTATGGAGTAGAAGCCGGTCTCCCATTAGAGAGGAAAATTCCATCACCGAGAATGGCGATTCAAGAAGGACTAACTACTGAAGACAATGCCAAATTACGTCTTCAAAAGCTAGAAGCACTTGACGAGAAGAGACTCAAGGCTTAA 2790 43.3 MSPRFGFLLLFLFSVLLGADSKCPRTCDVALGSYFVWEGSTLSLISQMFRLPSPDIIVSYNRDKIPNKDSVNSGIRINVPFSCDCISDTFLGHTFQYQINSGDTYSEIATKFYSNLTTVDMLQKFNNFDVLNLPPNGILNVVVNCSCGNPDVSKTYGLFVTYPIRSDDSWDKLQTDTNVSLSLLQQYNQGVNFSPGNLIFIPGRDKSGNYPPLNIRTCRRKSKSSKLLAFSQELSSQDGRALAPGSSLDKSTESNGQGGGIAAVTGITVDKSVDFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQASREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGRDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNKTSAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGSATEEDGAPSNAAEATTRPEELPSFSINDLLSLPQETKDALVEILKGDSCPTASTSQADTCASCCIAISFTDEDLLLGSKLHNRPLFVSGYIREQKFSRILIDDGSAANIMPKSTMNELGISMDELSTSKLPPEPLHPTVASWPFEAWGLDLVGPITPKSSSGHSYILAGTDYFSRWAEAVPLREAKKENIVSFVRTHIIYRYGIPHRIVTDNGRQLVNSLMDKLCEKFKFKQYKSSMYNAAVNGLAEAFNETLCNLLKKVVSKTKRDWQEKIGEVLWAYRTTHRTPTGVTPYFLVYGVEAGLPLERKIPSPRMAIQEGLTTEDNAKLRLQKLEALDEKRLKA 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2104780 2116859 - CcPI632755_02g002240.1 Cco02g0224 170981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0224 929 FunFam PTI1-like tyrosine-protein kinase 3 358 573 - -
Cco02g0224 929 Gene3D Phosphorylase Kinase; domain 1 273 357 - -
Cco02g0224 929 ProSiteProfiles Integrase catalytic domain profile. 726 886 IPR001584 GO:0015074(InterPro)
Cco02g0224 929 Gene3D - 722 926 IPR036397 GO:0003676(InterPro)
Cco02g0224 929 SUPERFAMILY Protein kinase-like (PK-like) 271 559 IPR011009 -
Cco02g0224 929 Pfam Protein kinase domain 289 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0224 929 MobiDBLite consensus disorder prediction 238 257 - -
Cco02g0224 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0224 929 FunFam LysM receptor kinase 2 266 357 - -
Cco02g0224 929 CDD STKc_IRAK 293 556 - -
Cco02g0224 929 SUPERFAMILY Ribonuclease H-like 726 880 IPR012337 -
Cco02g0224 929 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 586 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cco02g0224 929 Gene3D Transferase(Phosphotransferase) domain 1 358 578 - -
Cco02g0224 929 ProSiteProfiles Protein kinase domain profile. 287 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0224 929 Pfam LysM domain 97 136 IPR018392 -
Cco02g0224 929 Pfam Integrase core domain 730 826 IPR001584 GO:0015074(InterPro)
Cco02g0224 929 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524(InterPro)
Cco02g0224 929 SMART serkin_6 287 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0224 Cco-Chr2:2104780 Cco04g0121 Cco-Chr4:2738898 4.60E-112 dispersed
Cco08g1722 Cco-Chr8:28528014 Cco02g0224 Cco-Chr2:2104780 6.40E-49 dispersed
Cco10g0927 Cco-Chr10:19976081 Cco02g0224 Cco-Chr2:2104780 1.30E-39 dispersed
Cco11g1220 Cco-Chr11:24247474 Cco02g0224 Cco-Chr2:2104780 1.40E-34 dispersed
Cco04g0120 Cco-Chr4:2734607 Cco02g0224 Cco-Chr2:2104780 5.30E-59 transposed
Cco04g2373 Cco-Chr4:37141446 Cco02g0224 Cco-Chr2:2104780 2.00E-160 transposed
Cco05g0839 Cco-Chr5:7049051 Cco02g0224 Cco-Chr2:2104780 4.60E-178 transposed
Cco05g1774 Cco-Chr5:26323439 Cco02g0224 Cco-Chr2:2104780 1.50E-35 transposed
Cco05g2831 Cco-Chr5:35973086 Cco02g0224 Cco-Chr2:2104780 7.90E-76 transposed
Cco07g0550 Cco-Chr7:7090482 Cco02g0224 Cco-Chr2:2104780 1.10E-26 transposed
Cco07g1410 Cco-Chr7:28186903 Cco02g0224 Cco-Chr2:2104780 1.60E-75 transposed
Cco08g0333 Cco-Chr8:6593667 Cco02g0224 Cco-Chr2:2104780 1.80E-82 transposed
Cco09g0885 Cco-Chr9:8324953 Cco02g0224 Cco-Chr2:2104780 4.50E-114 transposed
Cco10g0676 Cco-Chr10:9312045 Cco02g0224 Cco-Chr2:2104780 1.70E-15 transposed
Cco10g1138 Cco-Chr10:23800740 Cco02g0224 Cco-Chr2:2104780 7.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86547 PF00069 Pkinase 5.80E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0224 K13429 - csv:101203576 1048.88