Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0232 | ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTACTAATAATCCTCAAACGTTGGACGACAACAACAACAATAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTGGCCTCCTCGCTGCCTACGTCAATTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCTATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA | 1029 | 44.7 | MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSTNNPQTLDDNNNNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPGLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2172233 | 2176141 | - | CcPI632755_02g002320.1 | Cco02g0232 | 170989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0232 | 342 | Gene3D | - | 249 | 311 | - | - | |
Cco02g0232 | 342 | SUPERFAMILY | Homeodomain-like | 246 | 321 | IPR009057 | - | |
Cco02g0232 | 342 | SMART | HOX_1 | 246 | 311 | IPR001356 | GO:0003677(InterPro) | |
Cco02g0232 | 342 | SMART | KNOX2_2 | 139 | 190 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco02g0232 | 342 | SMART | ELK_2 | 224 | 245 | IPR005539 | GO:0003677(InterPro) | |
Cco02g0232 | 342 | ProSiteProfiles | 'Homeobox' domain profile. | 244 | 307 | IPR001356 | GO:0003677(InterPro) | |
Cco02g0232 | 342 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 67 | 314 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco02g0232 | 342 | ProSitePatterns | 'Homeobox' domain signature. | 282 | 305 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco02g0232 | 342 | CDD | homeodomain | 256 | 308 | IPR001356 | GO:0003677(InterPro) | |
Cco02g0232 | 342 | FunFam | Homeobox protein knotted-1-like 2 | 249 | 311 | - | - | |
Cco02g0232 | 342 | Pfam | KNOX2 domain | 144 | 188 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco02g0232 | 342 | Pfam | Homeobox KN domain | 264 | 303 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco02g0232 | 342 | ProSiteProfiles | ELK domain profile. | 224 | 244 | IPR005539 | GO:0003677(InterPro) | |
Cco02g0232 | 342 | Pfam | KNOX1 domain | 95 | 132 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco02g0232 | 342 | Pfam | ELK domain | 224 | 245 | IPR005539 | GO:0003677(InterPro) | |
Cco02g0232 | 342 | SMART | KNOX1_2 | 92 | 136 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0232 | Cco-Chr2:2172233 | Cco05g2007 | Cco-Chr5:29168120 | 7.70E-73 | dispersed | |
Cco02g0232 | Cco-Chr2:2172233 | Cco04g1953 | Cco-Chr4:33844720 | 3.20E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58697 | PF03791 | KNOX2 | 6.20E-22 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0232 | - | - | - | 0.0 |