Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0232 ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTACTAATAATCCTCAAACGTTGGACGACAACAACAACAATAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTGGCCTCCTCGCTGCCTACGTCAATTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCTATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA 1029 44.7 MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSTNNPQTLDDNNNNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPGLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2172233 2176141 - CcPI632755_02g002320.1 Cco02g0232 170989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0232 342 Gene3D - 249 311 - -
Cco02g0232 342 SUPERFAMILY Homeodomain-like 246 321 IPR009057 -
Cco02g0232 342 SMART HOX_1 246 311 IPR001356 GO:0003677(InterPro)
Cco02g0232 342 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco02g0232 342 SMART ELK_2 224 245 IPR005539 GO:0003677(InterPro)
Cco02g0232 342 ProSiteProfiles 'Homeobox' domain profile. 244 307 IPR001356 GO:0003677(InterPro)
Cco02g0232 342 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 314 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco02g0232 342 ProSitePatterns 'Homeobox' domain signature. 282 305 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco02g0232 342 CDD homeodomain 256 308 IPR001356 GO:0003677(InterPro)
Cco02g0232 342 FunFam Homeobox protein knotted-1-like 2 249 311 - -
Cco02g0232 342 Pfam KNOX2 domain 144 188 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco02g0232 342 Pfam Homeobox KN domain 264 303 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco02g0232 342 ProSiteProfiles ELK domain profile. 224 244 IPR005539 GO:0003677(InterPro)
Cco02g0232 342 Pfam KNOX1 domain 95 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco02g0232 342 Pfam ELK domain 224 245 IPR005539 GO:0003677(InterPro)
Cco02g0232 342 SMART KNOX1_2 92 136 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0232 Cco-Chr2:2172233 Cco05g2007 Cco-Chr5:29168120 7.70E-73 dispersed
Cco02g0232 Cco-Chr2:2172233 Cco04g1953 Cco-Chr4:33844720 3.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58697 PF03791 KNOX2 6.20E-22 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0232 - - - 0.0