Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0233 ATGGCACAGTTGCCACCCAAAATCCCAAATATGACCCCTAATTGGCCCGAATTTTCCCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGCCCACCACCACGCCGGCGGTTACTCAAAACAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGTCGGTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTCGAGGAAGATTGCCGGACTGCCGCTGCTGCACCGCCCCCGCCGCCCCCGGGATCCGGTGGCCGGAATGAATTTGATAGATTCGATGACGAGCAATTCCTGTCGATGTTTAATGATGAAATCTCCGCCGCCGTCGCTCCCACCTTGTCGTCGTCGAACCCCTCCACGCCGTCGGATCATAATAGTATTAACGACGAGAAAGACGCCCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAAACCAAACACAATCCAATTCCATGACGACGGCGGCAACGGCGGCAACGGCGGCTTCCACTGATCGGATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTATCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGACAAGTATATCACCAGCAAAACATTAAGAAGATGGAAAACAATGCAGCACCATCACCGGCGATTACTCCGTCCCAACCCATCACCGCCATCGCCACGGATGCCAAACTTCCTAACATAGATCAAAACGAGCAAGTTCCGAACATCGTCGTTTAG 1005 49.55 MAQLPPKIPNMTPNWPEFSRQKIPSMETFAPPTTTPAVTQNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRTAAAAPPPPPPGSGGRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNESDEVQSQQQSENQTQSNSMTTAATAATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENNAAPSPAITPSQPITAIATDAKLPNIDQNEQVPNIVV 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2211156 2214272 - CcPI632755_02g002330.1 Cco02g0233 170990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0233 334 CDD bZIP_plant_RF2 195 245 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0233 334 Gene3D - 193 266 - -
Cco02g0233 334 FunFam Basic leucine zipper 61 193 266 - -
Cco02g0233 334 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0233 334 Pfam Basic region leucine zipper 191 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0233 334 SUPERFAMILY Leucine zipper domain 194 248 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0233 334 MobiDBLite consensus disorder prediction 136 154 - -
Cco02g0233 334 MobiDBLite consensus disorder prediction 155 187 - -
Cco02g0233 334 MobiDBLite consensus disorder prediction 82 101 - -
Cco02g0233 334 Coils Coil 273 293 - -
Cco02g0233 334 PANTHER BASIC LEUCINE ZIPPER 34 1 309 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cco02g0233 334 SMART brlzneu 190 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0233 334 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0233 334 MobiDBLite consensus disorder prediction 122 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0233 Cco-Chr2:2211156 Cco09g0965 Cco-Chr9:9108695 3.10E-10 dispersed
Cco02g2078 Cco-Chr2:33692121 Cco02g0233 Cco-Chr2:2211156 1.20E-08 transposed
Cco03g0053 Cco-Chr3:511936 Cco02g0233 Cco-Chr2:2211156 2.70E-08 transposed
Cco07g0536 Cco-Chr7:6877146 Cco02g0233 Cco-Chr2:2211156 5.40E-08 transposed
Cco11g1394 Cco-Chr11:26738620 Cco02g0233 Cco-Chr2:2211156 1.70E-07 transposed
Cco11g1824 Cco-Chr11:30912410 Cco02g0233 Cco-Chr2:2211156 3.60E-50 transposed
Cco05g1113 Cco-Chr5:10083761 Cco02g0233 Cco-Chr2:2211156 3.30E-07 transposed
Cco02g0233 Cco-Chr2:2211156 Cco02g0997 Cco-Chr2:12467048 8.70E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58698 PF07716 bZIP_2 4.20E-09 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0233 - - - 0.0