Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0254 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCGAAGCGGAAGTTGTGTCATTGTCGCCTAAGACGCTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAAGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACGCACAGAGCATATTGTGTAGCATTAGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCATGGCCAACAACAGCAACAATTCAATGGCTGATAGTTACAACAACTACCATTTCCTAAAGCCCACAAACAATAATAATCCTCCACAATTCTTCCCTTCCTCCAACTTTTTCAAACCAGATGAAACTTCCCATATGTTCCTCAATAACATTAATAATGTTACTCCCACAATAGGACTCCCCTTTTGGATGGCTACAAATTCTCACCAAATCAATTTCCCTCACTCACTACTTCCTCAACAAACAACAACAACAACAACAACCACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATACAGCAATGAAGAACAACAATCATCCCATCAATTTATGGCTTCATCAGCCAACATGTCAGCTACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAACCTCCACAACAGACCCATCATTGATGGAAAGTTTTGGGTTGAAATTCAGTACAATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTCAAACTCCAACATTATTCCTAGTTGTTGTAGCCTTGAAAATGGTGGAAATCATCATCAGGACTCTGAAATATACTCTGCACCAGCAAAGAGAATGAGACACACTGTTAGTGAAGAGAGTGTTACTGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACTCCATATGCCATCCATCACCAGTAAATGGATGGATCTGA 1305 41.53 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMANNSNNSMADSYNNYHFLKPTNNNNPPQFFPSSNFFKPDETSHMFLNNINNVTPTIGLPFWMATNSHQINFPHSLLPQQTTTTTTTTNSDVLSVPSLYSNEEQQSSHQFMASSANMSATVLLQKAAQIGVTTSTTDPSLMESFGLKFSTITDGKALFSGLYGSIMNSNSNIIPSCCSLENGGNHHQDSEIYSAPAKRMRHTVSEESVTGGEGETRDFLGVGMHSICHPSPVNGWI 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2358187 2361086 + CcPI632755_02g002540.1 Cco02g0254 171011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0254 434 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
Cco02g0254 434 FunFam protein indeterminate-domain 12-like 36 106 - -
Cco02g0254 434 Gene3D Classic Zinc Finger 91 183 - -
Cco02g0254 434 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Cco02g0254 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 423 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco02g0254 434 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cco02g0254 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cco02g0254 434 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Cco02g0254 434 Gene3D Classic Zinc Finger 53 80 - -
Cco02g0254 434 SMART c2h2final6 57 79 IPR013087 -
Cco02g0254 434 SMART c2h2final6 135 155 IPR013087 -
Cco02g0254 434 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cco02g0254 434 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cco02g0254 434 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0254 Cco-Chr2:2358187 Cco02g1121 Cco-Chr2:16329908 4.30E-105 dispersed
Cco02g0254 Cco-Chr2:2358187 Cco04g1089 Cco-Chr4:26345648 1.20E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58699 PF00096 zf-C2H2 0.014 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0254 K25870 - csv:101207997 647.121