Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0255 ATGCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTCCATTGGTTTGTTCCCTCAATCAAGAAGGACTATATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTCACTCCCTCTCTTCATGGAACCCACGCGACGACACTCCCTGCAACTGGTCCGGCGTTACTTGCGATTCCGTTACTCGTTCTGTTATCGCCCTCGACCTCTCCGATTTTCAGATCGCCGGACAGTTTCCCACTTTCGTTTGTCGTCTTCCTTCTCTTTCTTCACTATCTCTTTCCAATAACGCTATTAACGCTTCTCTTCCTGACGATGTCGCTTCCTGTTCTAGCCTCCAGTGGCTTAACTTGTCTCAGAATCTTCTTGCTGGTTCTATTCCCGATGCGATTTCCAAGATCTCGAATCTCCGCTCACTGGATCTCTCTGGAAACAACTTTTCCGGGGAGATTCCGACCAGTTTCGGTGGGTTTCAGCGACTTGAGACGCTGAATTTAGTTGATAATCTTTTGGATGGAACTATTCCGGGGAGTTTGGGTAACATTTCGAGTTTGAAAGAGCTTCAACTCGCTTACAATCCGTTTACGCGGAGTGAGATACCGAGTGCATTCGGGAACTTGACGAACCTGGAGGTTCTCTGGCTTGCTAACTGTAATCTTGTCGGTCAGATTCCGGCAACTGTTGGCCGGATGACTCGGCTTACGAATCTTGACTTGTCCAATAATAGACTCAGTGGGTCGATTCCGGTTTCACTCACTCAAATGAAAAGTTTAGTTCAAATTGAACTATTTAACAACTCGCTCTCCGGGGAGTTGCCTTTGGGACTGTCTAATTTAACTGCACTTCGAAGAATTGATGTGTCGATGAATCACTTGACTGGAACAATTCCGGATGAACTGTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGATTGGAAGGGCCTTTGCCGGAGAGTATCGTTAATTCCCCTTACTTGAATGAGCTCAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCGAGTAAACTCGGCCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGGAATCCCTGAAAACTTGTGTGCAAAAGGGACATTGGAAGAACTTATATTGATTTACAATTCGTTTTCCGGAAGAATCCCGGCAAGTCTTGGAAAATGCAGGAGCTTAAGCCGGATTCGAATGAGGAACAACAGACTCTCGGGTGCGGTTCCTGATGAATTCTGGGGTCTGCCCAATGTCTATTTGCTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCTATTTCTTCGATGATATCTAGCGCTAAGAATCTCTCTATTTTGATGATCTCAGAAAATCAATTTTCAGGGTTAATTCCTTCCGAGATTGGGTCGTTAAGTAATCTGACTGAACTTTCAGGTAGTGACAATATGTTTTCCGGTCGAATCCCGGGAACTTTGGTAAAGTTACACTTGTTGAGTACACTCGATCTAAGCAAGAACAAACTTTCTGGTGAATTGCCAATGGGAATTGGAGCTTTGAAAAGGCTAAACGAGTTATATTTAGCAAACAACAGGCTATCTGGCAATATCCCGAGTGAAATTGGAAGCCTACCTGTGCTTAATTATCTCGATCTTTCGAGTAACCATCTCAGTGGAAGTATACCCCTTGAATTGCAGAATTTGAAACTGAATTCGCTAAATCTGTCGAACAATCGGTTATCAGGAGTACTTCCTCCTCTTTATGCAGAGGATATTTACAGAGATAGCTTTCTGGGTAATCCAGGTTTGTGCCATAACGACCCAAGTCTTTGTCCTCATGTTGGAAAAGGCAAAAACCAAGGGTATTGGCTTCTCAGATCCATTTTTCTACTTGCTATCATTGTTTTTTTTGTTGGGGTCATTTGGTTTTTGTTGAAGTACAAGGAATTCAAGAAGAGTAAAAAAGGAATTGCCATGTCCAAGTGGAAATCATTTCATAAGCATGGTTTTAGTGAATATGAAATAGCAGATTGCCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCATCTGGCAAAGTGTACAAAGTTGTGCTAAAAAACGGCGAGATCGTGGCGGTGAAGAAGCTATGGCAAGGAGCAAGAAAAGAGGACACAAGTTTGGATTCAGAGAAAGATGGATTTGAAGCTGAAGTTGAGACTTTAGGGAAGATCCGTCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACTGGCAACTGCAAGCTGCTTGTTTACGAGTACATGCCGAATGGAAGCTTGGGAGATTTGTTGCACGGCAGCAAAAAGCGCTTTCTGGATTGGCCTACAAGGTATAAAGTAGTTTTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATTAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCAAGAGTTGCTGACTTTGGATTGGCAAAGTTTTTGAACGCTGGCAAGGGATCAGAATCAATGTCTGTCATTGCCGGTTCTTGTGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTAGTGACAGGGCGGCCTCCAAATGATCCAGAATTTGGGGATAGAGACTTGACAAAGTGGGTCTATGCCACCGTCGATGTTAGAGGACTCGATCGAGTGATTGATCCGAAACTCGGTTCTGAATACAAGGAAGAAATATACAGAGTCCTTGACGTGGGACTGCTTTGCACAAGCTCACTTCCCATCAACCGCCCTTCAATGAGACGAGTCGTTAAACTGCTGCAGGAGGCTGCCACAGAAACCAGACCCGCCATTGTTAAAAAGGAACCCAAACTTTCTCCATATTTCTCCTAG 2934 43.59 MPSLLLLLLLLLLLSSPLVCSLNQEGLYLQRVKLGLSDPTHSLSSWNPRDDTPCNWSGVTCDSVTRSVIALDLSDFQIAGQFPTFVCRLPSLSSLSLSNNAINASLPDDVASCSSLQWLNLSQNLLAGSIPDAISKISNLRSLDLSGNNFSGEIPTSFGGFQRLETLNLVDNLLDGTIPGSLGNISSLKELQLAYNPFTRSEIPSAFGNLTNLEVLWLANCNLVGQIPATVGRMTRLTNLDLSNNRLSGSIPVSLTQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNHLTGTIPDELCALQLESLNLFENRLEGPLPESIVNSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGTLEELILIYNSFSGRIPASLGKCRSLSRIRMRNNRLSGAVPDEFWGLPNVYLLELVENSLSGSISSMISSAKNLSILMISENQFSGLIPSEIGSLSNLTELSGSDNMFSGRIPGTLVKLHLLSTLDLSKNKLSGELPMGIGALKRLNELYLANNRLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNSLNLSNNRLSGVLPPLYAEDIYRDSFLGNPGLCHNDPSLCPHVGKGKNQGYWLLRSIFLLAIIVFFVGVIWFLLKYKEFKKSKKGIAMSKWKSFHKHGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEIVAVKKLWQGARKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSKKRFLDWPTRYKVVLDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDRDLTKWVYATVDVRGLDRVIDPKLGSEYKEEIYRVLDVGLLCTSSLPINRPSMRRVVKLLQEAATETRPAIVKKEPKLSPYFS 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2367047 2370269 - CcPI632755_02g002550.1 Cco02g0255 171012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0255 977 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 185 - -
Cco02g0255 977 Gene3D Phosphorylase Kinase; domain 1 662 762 - -
Cco02g0255 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 971 - -
Cco02g0255 977 SUPERFAMILY RNI-like 71 381 - -
Cco02g0255 977 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Cco02g0255 977 FunFam Receptor-like protein kinase HSL1 663 762 - -
Cco02g0255 977 Pfam Leucine rich repeat 90 150 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Cco02g0255 977 ProSiteProfiles Leucine-rich repeat profile. 236 258 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 PRINTS Leucine-rich repeat signature 545 558 - -
Cco02g0255 977 PRINTS Leucine-rich repeat signature 237 250 - -
Cco02g0255 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 957 IPR050647 -
Cco02g0255 977 SMART LRR_typ_2 185 209 IPR003591 -
Cco02g0255 977 SMART LRR_typ_2 521 545 IPR003591 -
Cco02g0255 977 SMART LRR_typ_2 89 113 IPR003591 -
Cco02g0255 977 SMART LRR_typ_2 137 160 IPR003591 -
Cco02g0255 977 SMART LRR_typ_2 282 306 IPR003591 -
Cco02g0255 977 SMART LRR_typ_2 234 258 IPR003591 -
Cco02g0255 977 Gene3D Transferase(Phosphotransferase) domain 1 763 971 - -
Cco02g0255 977 FunFam Receptor-like protein kinase HSL1 307 614 - -
Cco02g0255 977 Gene3D Ribonuclease Inhibitor 179 269 IPR032675 -
Cco02g0255 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0255 977 Gene3D Ribonuclease Inhibitor 270 614 IPR032675 -
Cco02g0255 977 SUPERFAMILY Protein kinase-like (PK-like) 673 954 IPR011009 -
Cco02g0255 977 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Cco02g0255 977 Pfam Protein kinase domain 682 896 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0255 977 ProSiteProfiles Protein kinase domain profile. 680 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0255 977 SUPERFAMILY L domain-like 356 605 - -
Cco02g0255 977 SMART serkin_6 680 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0255 977 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
Cco02g0255 977 Pfam Leucine Rich Repeat 187 210 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 500 520 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 570 587 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 212 233 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 307 328 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Cco02g0255 977 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0255 Cco-Chr2:2367047 Cco04g2113 Cco-Chr4:35000119 9.40E-132 dispersed
Cco02g0255 Cco-Chr2:2367047 Cco03g0651 Cco-Chr3:6626657 3.10E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86548 PF00069 Pkinase 8.20E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0255 - - - 0.0