Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0288 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCTCAACTGTAACCATTTCAATTCCTTCTCTCTCTGTCTTCTTCTTCCTAACGGCGCTTTGATTCGCCTGCTCGAATTCCGAAGACGCACTTGGGAAAAAAGGTATGTGAATATTTTTCTCGTGTTTCTGAAATTGAAGTCGGAGTTTTGTAATTTGGATCTTACTTATTCTGATCGGTACTGGAACCTGGAGAATCTAGTCACTCAGCTTAACCTGAGCCTACTTGGACTGTGTTTTGGACGAAATTGGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGGAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCGCAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGACCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAGAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCCAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCGAGCGAGGTTGACATCGTCAATGATGGATACCGTTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCAAAATAATTTGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATATGCCTCGATATGGTGGTCAATCCTAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTTAAACTGTACAAGCCAATTCTCTCGTCCAAAATACAAGTTATTTGTCTTATTCTTATTTCGACCATGAATCTTGAGAATCATATTGAGGGTTGTTTCAGACTTGCTGAGTTGCCTTATACACCAGAACCAAACAATTGCTCGGTGGAACCGGGACAATTCAGGGGCTCCATGGAACCTGAGAAGCTGATTCTTATTTGGAATGCCAGCCAGTCTTCTAATTGTTACACCTTGTTTGTTGTGGCTTCGCTCCATGTGGGAAATTAG 1911 43.33 MLLAVINFAGNFIGRLSAGAPSLLLNCNHFNSFSLCLLLPNGALIRLLEFRRRTWEKRYVNIFLVFLKLKSEFCNLDLTYSDRYWNLENLVTQLNLSLLGLCFGRNWFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSGSQPQTSQDDPGGTNASKSDRKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITADQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDNVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSQNNLSSEGKLIEKNGKSNATEASDGICLDMVVNPSPGVASGQNKQLKLYKPILSSKIQVICLILISTMNLENHIEGCFRLAELPYTPEPNNCSVEPGQFRGSMEPEKLILIWNASQSSNCYTLFVVASLHVGN 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2624356 2629127 + CcPI632755_02g002880.1 Cco02g0288 171045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0288 636 FunFam WRKY transcription factor 57 388 462 - -
Cco02g0288 636 Gene3D WRKY domain 214 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 FunFam WRKY transcription factor 219 289 - -
Cco02g0288 636 MobiDBLite consensus disorder prediction 346 368 - -
Cco02g0288 636 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 Gene3D WRKY domain 389 455 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 ProSiteProfiles WRKY domain profile. 224 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 MobiDBLite consensus disorder prediction 139 164 - -
Cco02g0288 636 Pfam WRKY DNA -binding domain 403 460 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 MobiDBLite consensus disorder prediction 313 345 - -
Cco02g0288 636 MobiDBLite consensus disorder prediction 132 164 - -
Cco02g0288 636 SMART WRKY_cls 402 461 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 SMART WRKY_cls 229 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 SUPERFAMILY WRKY DNA-binding domain 224 288 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0288 636 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 270 476 IPR044810 GO:0003700(InterPro)
Cco02g0288 636 MobiDBLite consensus disorder prediction 307 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0288 Cco-Chr2:2624356 Cco10g0387 Cco-Chr10:4528770 1.80E-59 dispersed
Cco02g0288 Cco-Chr2:2624356 Cco10g0443 Cco-Chr10:5212577 2.00E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58701 PF03106 WRKY 4.90E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0288 K18834 - csv:101212482 741.88