Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0288 | ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCTCAACTGTAACCATTTCAATTCCTTCTCTCTCTGTCTTCTTCTTCCTAACGGCGCTTTGATTCGCCTGCTCGAATTCCGAAGACGCACTTGGGAAAAAAGGTATGTGAATATTTTTCTCGTGTTTCTGAAATTGAAGTCGGAGTTTTGTAATTTGGATCTTACTTATTCTGATCGGTACTGGAACCTGGAGAATCTAGTCACTCAGCTTAACCTGAGCCTACTTGGACTGTGTTTTGGACGAAATTGGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGGAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCGCAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGACCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAGAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCCAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCGAGCGAGGTTGACATCGTCAATGATGGATACCGTTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCAAAATAATTTGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATATGCCTCGATATGGTGGTCAATCCTAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTTAAACTGTACAAGCCAATTCTCTCGTCCAAAATACAAGTTATTTGTCTTATTCTTATTTCGACCATGAATCTTGAGAATCATATTGAGGGTTGTTTCAGACTTGCTGAGTTGCCTTATACACCAGAACCAAACAATTGCTCGGTGGAACCGGGACAATTCAGGGGCTCCATGGAACCTGAGAAGCTGATTCTTATTTGGAATGCCAGCCAGTCTTCTAATTGTTACACCTTGTTTGTTGTGGCTTCGCTCCATGTGGGAAATTAG | 1911 | 43.33 | MLLAVINFAGNFIGRLSAGAPSLLLNCNHFNSFSLCLLLPNGALIRLLEFRRRTWEKRYVNIFLVFLKLKSEFCNLDLTYSDRYWNLENLVTQLNLSLLGLCFGRNWFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSGSQPQTSQDDPGGTNASKSDRKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITADQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDNVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSQNNLSSEGKLIEKNGKSNATEASDGICLDMVVNPSPGVASGQNKQLKLYKPILSSKIQVICLILISTMNLENHIEGCFRLAELPYTPEPNNCSVEPGQFRGSMEPEKLILIWNASQSSNCYTLFVVASLHVGN | 636 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2624356 | 2629127 | + | CcPI632755_02g002880.1 | Cco02g0288 | 171045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0288 | 636 | FunFam | WRKY transcription factor 57 | 388 | 462 | - | - | |
Cco02g0288 | 636 | Gene3D | WRKY domain | 214 | 289 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | FunFam | WRKY transcription factor | 219 | 289 | - | - | |
Cco02g0288 | 636 | MobiDBLite | consensus disorder prediction | 346 | 368 | - | - | |
Cco02g0288 | 636 | SUPERFAMILY | WRKY DNA-binding domain | 394 | 462 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | Gene3D | WRKY domain | 389 | 455 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | ProSiteProfiles | WRKY domain profile. | 224 | 288 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | MobiDBLite | consensus disorder prediction | 139 | 164 | - | - | |
Cco02g0288 | 636 | Pfam | WRKY DNA -binding domain | 403 | 460 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | Pfam | WRKY DNA -binding domain | 230 | 286 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | ProSiteProfiles | WRKY domain profile. | 397 | 462 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | MobiDBLite | consensus disorder prediction | 313 | 345 | - | - | |
Cco02g0288 | 636 | MobiDBLite | consensus disorder prediction | 132 | 164 | - | - | |
Cco02g0288 | 636 | SMART | WRKY_cls | 402 | 461 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | SMART | WRKY_cls | 229 | 287 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | SUPERFAMILY | WRKY DNA-binding domain | 224 | 288 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0288 | 636 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 270 | 476 | IPR044810 | GO:0003700(InterPro) | |
Cco02g0288 | 636 | MobiDBLite | consensus disorder prediction | 307 | 368 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0288 | Cco-Chr2:2624356 | Cco10g0387 | Cco-Chr10:4528770 | 1.80E-59 | dispersed | |
Cco02g0288 | Cco-Chr2:2624356 | Cco10g0443 | Cco-Chr10:5212577 | 2.00E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58701 | PF03106 | WRKY | 4.90E-26 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0288 | K18834 | - | csv:101212482 | 741.88 |