Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0290 ATGTCTCAGAATTCTAAAGTCTCTTGTTCTAAGGTTAGATTACTAGGTGGTTTCAAGGTGAAGAGGGCTAAGGAGCATTTCCATGGCCAAGGGTGGAGTAACCTACTTTATATCTTGCCATTTGGTGTAATTTTGATTCTGGGTGTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAATTCGGGAAGTGGAGATTCCAAATACGTGTAAAGAGAAGAGCTGGAACTTTCTGAAGCATTTCAATGTCAGTGAGAACCAATTTCATGCTTTGGATTCGTTCTTCTTTCATTCAGATCAGACAGCATCTCTCCTCTGTGCTAAAGACTCAGAGCCTGGCAATGCACTGAAAGACTGCATTCCTTGTGCATTGAAGATTTTGGAACGGGAACAAGAATCGCAAAAGAAGCATGGGTGGCTTTCTGAAGATCTACAATCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGAGTCCTTCAATATTGGTCAAATGCAGTTAGTGGACAAGATACACTCACTTACTTCAAAATCTTCTTTTGCATTTGTGTCTCCCTGTCTTCAGATTCATAAAGAGAGGATCTTGCATACTAGGGAAATTGGAAATGGGCATTCTCGAAGTTTGAATGGATTAGTAATGGCATGCTTATGGATCCTTGCTGTGATGATATCATGCCTGAAGATGTCTGGTTTTCATTTGAAATTAAAGAACCACATACACAAGCCACTAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTACAGCAGGTGTTGCTACAGCAGCAGTTAGATCCATCTCCAAGTCCTCCAAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTGCTTGGAATTATTGGGTCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTGAGGAGAGAAGAAACACTTTCTAACATGTGCGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTGATCATTCAGACAGAAAGCGATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACCCTGGTTCAGGATTCTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCTCATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACGCTGAGCTTCCTCCTGATGCAACACCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGGGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCTAGCAAACAATCAATTGTTGTTGATGTTTACGACACAACTAATGCATCTGCTCCCATTAAGATGTATGGATCTGATGTAATAGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAACCACAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTGGTTATTACTTTACTAGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAAAATGACTATGATGAGATGATGAAACTCAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAATTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTGTGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATAGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTTGATAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGAATAGAGTTAGCTGTTTATGTCTCTAATTTGGTCCCTGAAGTTCTCATTGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATCAAGTTCACCAAGGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAGGTGAGGACTCCCCTCGAGGCAATGGACAGTGTGCTAAGACAAGGCCTACATTTAGTGAATGAGACACCGAGAAAAAGTCACAATACATTAAGTGGGTTTCCAGTGGTCAGGAGGTGCAAGAGTTGGGAGTTTTTCGAGATATTTAGAAGAACAGATGTGATGAAAGAAAACGACGACGTAATTAAGTTGCTTGTATCAGTTGAGGATACGGGTCATGGAATTCCTTTAGATGCACAAAGTCGAATTTTTATGCCTTTTATGCAAGCAGATAGTTCCACTTCACGCAAGTATGGTGGGACCGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGTAGCACATTTTCATTTACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTTGATACAAAGTTGCAGCAGAATGATTCAGCCATGTTAGATTTCCGAGGACTGCGAGCGTTGGTAGTGGATGATAGAAGCATTCGAGCTGAGGTAACAAAATATCATCTGAAGAGGTTAGGGATCTCAGTGGACATAGTTTCGAGTCTGGCTTCAGCACATGAATACTTAACTAATAATTGCATCAAAAGTCCATCCAAGCCTTTGGCCATGGTGCTTATTGACAAAGATGTATGGGATAAGGAAACCGATCCGACAAACCCTCGCGTGTTTAAAGAACATGGGGTAAATGGGAAGGAAGAATGGAGAGGAAGTCCTAAGATCTTTCTCTTAGCCACCTCCATTAGCCCTCAAGAGACTAGAGCTCTCAAGTCGGCTGGTTATGTTGATAATGTAATGACAAAACCCCTTAGGTCAGGTGTCCTGATTGGATGTTTCCAGGAAGCTTTCGGGAAGGTCAACCGAAAGAAACCGTCTATTCTGGGGAACTTACTGAGAGAAAAGCAGATATTGGTGGTTGATGACAATGCAGTCAATAGACGAGTTGCCGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTGGCGCTGCTATTTCATTGTTAAAACCACCACACAAGTTCAATGCTTGCTTCATGGATCTTCAAATGCCTGAGATGGATGGGTTTGAAGCAACACGGCAGATACGAAATAACGAAAATAAGGTCAACGAGGACATTGCTTCCGGGAAAGCATCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCCGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAATTGTGGGATGGATGGTTATGTAGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCAGTCGCTCGTTTCTTTGAGTCCGATGCTCGAGTAGAACATGAATAG 3720 42.5 MSQNSKVSCSKVRLLGGFKVKRAKEHFHGQGWSNLLYILPFGVILILGVWYIFSLCDGSSIREVEIPNTCKEKSWNFLKHFNVSENQFHALDSFFFHSDQTASLLCAKDSEPGNALKDCIPCALKILEREQESQKKHGWLSEDLQSEGQCPIRGEMESFNIGQMQLVDKIHSLTSKSSFAFVSPCLQIHKERILHTREIGNGHSRSLNGLVMACLWILAVMISCLKMSGFHLKLKNHIHKPLKHPSVENQPVIQLQQVLLQQQLDPSPSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLSNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVDHSDRKRFEEEHGWTIKKMGTEDQTLVQDSIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNAELPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYDEMMKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDCAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTKDKGHIFVTVHLADEVRTPLEAMDSVLRQGLHLVNETPRKSHNTLSGFPVVRRCKSWEFFEIFRRTDVMKENDDVIKLLVSVEDTGHGIPLDAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKLQQNDSAMLDFRGLRALVVDDRSIRAEVTKYHLKRLGISVDIVSSLASAHEYLTNNCIKSPSKPLAMVLIDKDVWDKETDPTNPRVFKEHGVNGKEEWRGSPKIFLLATSISPQETRALKSAGYVDNVMTKPLRSGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGGAAISLLKPPHKFNACFMDLQMPEMDGFEATRQIRNNENKVNEDIASGKASIEMFGNVAHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARFFESDARVEHE 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2629916 2640185 - CcPI632755_02g002900.1 Cco02g0290 171047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0290 1239 Gene3D - 606 697 - -
Cco02g0290 1239 FunFam Histidine kinase 4 606 697 - -
Cco02g0290 1239 Gene3D CHASE domain 353 580 IPR042240 -
Cco02g0290 1239 ProSiteProfiles CHASE domain profile. 349 573 IPR006189 -
Cco02g0290 1239 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 620 700 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco02g0290 1239 SMART REC_2 1092 1226 IPR001789 GO:0000160(InterPro)
Cco02g0290 1239 Pfam CHASE domain 352 546 IPR006189 -
Cco02g0290 1239 SUPERFAMILY CheY-like 938 1074 IPR011006 -
Cco02g0290 1239 ProSiteProfiles Response regulatory domain profile. 943 1074 IPR001789 GO:0000160(InterPro)
Cco02g0290 1239 FunFam Histidine kinase 4 353 580 - -
Cco02g0290 1239 CDD HisKA 634 695 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco02g0290 1239 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 843 914 IPR003594 -
Cco02g0290 1239 SMART HKATPase_4 746 919 IPR003594 -
Cco02g0290 1239 SMART HisKA_10 634 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco02g0290 1239 ProSiteProfiles Response regulatory domain profile. 1093 1230 IPR001789 GO:0000160(InterPro)
Cco02g0290 1239 ProSiteProfiles Histidine kinase domain profile. 641 919 IPR005467 -
Cco02g0290 1239 SMART CHASE_2 349 548 IPR006189 -
Cco02g0290 1239 Pfam Response regulator receiver domain 1094 1178 IPR001789 GO:0000160(InterPro)
Cco02g0290 1239 PRINTS Bacterial sensor protein C-terminal signature 879 897 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco02g0290 1239 PRINTS Bacterial sensor protein C-terminal signature 903 916 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco02g0290 1239 PRINTS Bacterial sensor protein C-terminal signature 862 872 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco02g0290 1239 PRINTS Bacterial sensor protein C-terminal signature 844 858 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco02g0290 1239 SUPERFAMILY CheY-like 1090 1230 IPR011006 -
Cco02g0290 1239 Coils Coil 611 631 - -
Cco02g0290 1239 CDD REC_hyHK_CKI1_RcsC-like 1094 1226 - -
Cco02g0290 1239 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 688 914 IPR036890 -
Cco02g0290 1239 CDD HATPase_EvgS-ArcB-TorS-like 751 917 - -
Cco02g0290 1239 Gene3D - 300 352 - -
Cco02g0290 1239 PANTHER TWO-COMPONENT HISTIDINE KINASE 273 1229 IPR050956 -
Cco02g0290 1239 Pfam His Kinase A (phospho-acceptor) domain 634 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco02g0290 1239 Gene3D - 936 1079 - -
Cco02g0290 1239 Gene3D - 1087 1236 - -
Cco02g0290 1239 Gene3D - 698 919 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0290 Cco-Chr2:2629916 Cco10g0065 Cco-Chr10:647061 1.60E-40 dispersed
Cco01g0703 Cco-Chr1:7357528 Cco02g0290 Cco-Chr2:2629916 9.30E-276 transposed
Cco02g1620 Cco-Chr2:28825783 Cco02g0290 Cco-Chr2:2629916 7.40E-27 transposed
Cco05g1829 Cco-Chr5:27141792 Cco02g0290 Cco-Chr2:2629916 1.10E-42 transposed
Cco06g0219 Cco-Chr6:2329359 Cco02g0290 Cco-Chr2:2629916 2.60E-305 transposed
Cco09g0538 Cco-Chr9:4699463 Cco02g0290 Cco-Chr2:2629916 4.30E-27 transposed
Cco11g0125 Cco-Chr11:1321306 Cco02g0290 Cco-Chr2:2629916 1.50E-278 transposed
Cco02g0290 Cco-Chr2:2629916 Cco02g1037 Cco-Chr2:13603027 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58702 PF03924 CHASE 9.30E-36 CL0165 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0290 K14489 - vvi:100263145 1551.95