Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0294 ATGGCCACCTCTGCTATCCAACAGTCCGCCTTCGCCGGCCAGGCTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAGGGTTGGCGCTGTCGGTGGCGGCCGCTTCACCATGCGACGAACAGTCAAGAGTGCTCCACAGAGCATATGGTATGGACCAGATCGCCCAAAATACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCCGGTGACTATGGATGGGACACAGCCGGTCTATCAGCAGATCCCGAGACTTTTGCGAAGAACCGTGAGCTTGAGGTGATCCACTCCCGATGGGCAATGCTTGGTGCATTAGGTTGTGTCTTCCCTGAACTCCTTGCAAAGAATGGTGTCCAGTTTGGTGAGTCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGATTACCTTGGCAACCCAAACCTCATCCATGCTCAGAGTATCCTTGCAATCTGGGCTGTCCAGGTTGTGCTCATGGGCTTCGTTGAAGGTTACCGGGTTGGTGGTGGTCCCCTTGGTGAAGGACTGGACCCAATTTACCCAGGAGGCGCCTTCGACCCACTCGGATTGGCAGATGACCCAGATGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTTGTCCAGGCTATCGTTACAGGAAAGGGTCCTATTGAGAATCTCTTTGACCATGTTGCAGATCCTGTTGCCAACAATGCATGGGCTTACGCCACCAACTTCGTCCCCGGAAAATGA 798 52.38 MATSAIQQSAFAGQAALKQSNELVRRVGAVGGGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVQFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2676465 2677655 - CcPI632755_02g002940.1 Cco02g0294 171051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0294 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cco02g0294 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Cco02g0294 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cco02g0294 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cco02g0294 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0294 Cco-Chr2:2676465 Cco04g2219 Cco-Chr4:35801754 5.00E-120 dispersed
Cco02g0294 Cco-Chr2:2676465 Cco04g2218 Cco-Chr4:35799355 2.20E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0294 K08913 - csv:101212963 526.939