Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0317 | ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGCGATTCTTGTAAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCATTAGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCAAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCACTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGTACAGCTTCAGATTTTGGCACTCCTGCAACTTGGACAACCTGTGTAGTAATCCAACTTGA | 522 | 43.3 | MGLSSLPAPSEGVLNAILVNAALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDPFESSSELGDPNFGSSWSYLEMFRNRYPRIRFDKLQGSECREHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFWYSFRFWHSCNLDNLCSNPT | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2878987 | 2880742 | - | CcPI632755_02g003170.1 | Cco02g0317 | 171074 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0317 | 173 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 146 | IPR013083 | - | |
Cco02g0317 | 173 | SUPERFAMILY | RING/U-box | 93 | 146 | - | - | |
Cco02g0317 | 173 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
Cco02g0317 | 173 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
Cco02g0317 | 173 | PANTHER | - | 1 | 154 | IPR044249 | - | |
Cco02g0317 | 173 | SMART | ring_2 | 99 | 140 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0317 | Cco-Chr2:2878987 | Cco02g1178 | Cco-Chr2:21021174 | 1.00E-52 | dispersed | |
Cco02g0317 | Cco-Chr2:2878987 | Cco05g0178 | Cco-Chr5:1401879 | 1.40E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0317 | K16285 | - | csv:101215843 | 293.123 |