Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0317 ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGCGATTCTTGTAAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCATTAGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCAAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCACTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGTACAGCTTCAGATTTTGGCACTCCTGCAACTTGGACAACCTGTGTAGTAATCCAACTTGA 522 43.3 MGLSSLPAPSEGVLNAILVNAALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDPFESSSELGDPNFGSSWSYLEMFRNRYPRIRFDKLQGSECREHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFWYSFRFWHSCNLDNLCSNPT 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2878987 2880742 - CcPI632755_02g003170.1 Cco02g0317 171074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0317 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Cco02g0317 173 SUPERFAMILY RING/U-box 93 146 - -
Cco02g0317 173 Pfam Ring finger domain 98 141 IPR001841 -
Cco02g0317 173 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cco02g0317 173 PANTHER - 1 154 IPR044249 -
Cco02g0317 173 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0317 Cco-Chr2:2878987 Cco02g1178 Cco-Chr2:21021174 1.00E-52 dispersed
Cco02g0317 Cco-Chr2:2878987 Cco05g0178 Cco-Chr5:1401879 1.40E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0317 K16285 - csv:101215843 293.123