Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0322 ATGGGAGCTCATTCCCACGGCGGTCGAAAACCGGCCAATATCATCACTGATTCTCACCATGAATTCCTCCGACTGTTTCTCGAAAGTGAAGAGGAGTTTACGGAAGATGCCATCTTTTACTCGTATACAAGACACATCAATGGCTTTGCAGCAATGTTGGAAGATGAAGTTGCTGCTCAATTAGCTAAGCACCCGAAAGTGGTGTCGATTTTTTTGAACAGAGGAAGAAAGTTACACACAACAAGATCATGGGAGTTCATGGCAATGGAGAACAACAATGGACTTATCACTTCAGAATCAATATGGAAGAAGGCAAGATTTGGAGAAGACACCATTATTGGAAACCTTGATACTGGGGTGTGGCCAGAATCAAAGAGCTTTAGTGATTATGATGATTTGGGACCAATTCCTCTTAAGTGGAGAGGAATCTGCCAAAACCAAAATGATCCTTCTTTCCATTGCAATAGGAAACTAATCGGAGCAAGATACTTCAACAAAGGCTATGAATCCGTCGTCGGACCTCTCAATTCTTCGTTCAATTCGCCGAGGGACAAAGAAGGGCATGGTTCTCATACCTTGTCCACGGCGGGCGGTAACTTCGTCGCCGGAGCTAGCGTTTTCGGCTTGGGGAATGGCACCGCCAAGGGCGGATCACCTAGGGCTCGCGTGGCCGCTTACAAGGTCTGCTGGCCTCCAGCGGCCGGAAATGAGTGCTTCGATGCCGATATATTGGCGGCGTTTGATTTGGCGATCCACGACGGTGTCGACGTGTTGTCGGTGTCGCTTGGAGGAGATCCAAATCCGTTGTTTAACGATAGTGTAGCCATTGGCTCATTCCACGCCGTGAAGCATGGGATTGTTGTGATTTGCTCTGCCGGAAATTCGGGACCGGCAGCCGGTTCGGTAACCAATATTGCGCCCTGGCAAATCACCGTCGGAGCCAGCACCATGGACAGGAAGTTCCCTAGTCTTGTCGTTCTTGGGAACAAGAAGCAGATTGAGGGTGAAAGCCTGTCTCAAGAAGCTTTGCCAAGCAGGAAGTTATATCCACTCATGAGTGCTGCGGATGTTAGATTAGCCAATGCATCAGCTCATGAAGCTCAATTGTGTAAAGCTGGTACGCTTGATCCTATGAAGGCTAAGGGAAAGATTCTCGTCTGCCTTCGAGGCGATAATGCAAGAGTTGACAAGGGCGAGCAAGCACTGTTGGCTGGTGCCGTGGGCATGATTCTCGCCAATAATGAGCCTAGTGGGAATGAAATCCTTGCTGACCCACATGTCCTTCCAGCCTCGCACATAAACTTCACTGATGGCACTTCGGTCTTTGCATACATCAATTCAACCAAGTTCCCTGGGGCTTATATCACACGAGCTACAACTCAATTAGGTATAAGGCCAGCTCCATTTATGGCAGCATTTTCATCAGTGGGGCCAAACACTATTACTCCAGAGATCTTAAAGCCTGATATTACAGCTCCTGGGCTGAGTGTTATAGCTGCTTATACTGAAGCAGAAGGCCCTACAAATCAAGAATATGATAATCGTCGGGTTCCTTTTAACTCAGTATCAGGAACTTCTATGTCATGCCCCCATGTTTCTGGTATTGCTGGTCTTCTCAGGACTCTTTACCCTCATTGGAGTCCTGCAGCTATAAAATCTGCCATCATGACCACAGCAAACACTTTGGACAACAACTTCGAGCCGCTCCTCAACGCGTCCTACTCTGTGGCCACACCATTCAACTATGGAGCAGGACACATTAATCCAAATGGTGCTACGGAACCTGGCTTGGTCTATGACATAGAGGTTAATGAGTATCTGTTATTTCTATGTGCATTAGGATATAACCAAGCTCAAATATCACAATTCTCCAATGGTCCCTTCAATTGCTCGGAGCCTATTAGTCTTACAAATCTCAACTACCCTTCAATTACTGTCCCTAAGCTCTCTAGATCGATCACAATTACTCGAAGACTTAAGAACGTTGGTTCTCCTGGAACGTACAAAGCCGAGATAAGAAAACCGGCTGGGATATCGGTTTGGGTTAAGCCAAAGACATTGAACTTCACAAGATTAGGTGAAGAGCAGAGCTTCAAAGTTTTTATGAAAGTTAAGGAACAGAATGTAGGACGGGAGAACTATGTATACGGTGATTTGATATGGTCAGATGGTAAGCACCATGTAAGAAGCCCTATTGTGGTAAAGGTAGTCTAG 2214 46.48 MGAHSHGGRKPANIITDSHHEFLRLFLESEEEFTEDAIFYSYTRHINGFAAMLEDEVAAQLAKHPKVVSIFLNRGRKLHTTRSWEFMAMENNNGLITSESIWKKARFGEDTIIGNLDTGVWPESKSFSDYDDLGPIPLKWRGICQNQNDPSFHCNRKLIGARYFNKGYESVVGPLNSSFNSPRDKEGHGSHTLSTAGGNFVAGASVFGLGNGTAKGGSPRARVAAYKVCWPPAAGNECFDADILAAFDLAIHDGVDVLSVSLGGDPNPLFNDSVAIGSFHAVKHGIVVICSAGNSGPAAGSVTNIAPWQITVGASTMDRKFPSLVVLGNKKQIEGESLSQEALPSRKLYPLMSAADVRLANASAHEAQLCKAGTLDPMKAKGKILVCLRGDNARVDKGEQALLAGAVGMILANNEPSGNEILADPHVLPASHINFTDGTSVFAYINSTKFPGAYITRATTQLGIRPAPFMAAFSSVGPNTITPEILKPDITAPGLSVIAAYTEAEGPTNQEYDNRRVPFNSVSGTSMSCPHVSGIAGLLRTLYPHWSPAAIKSAIMTTANTLDNNFEPLLNASYSVATPFNYGAGHINPNGATEPGLVYDIEVNEYLLFLCALGYNQAQISQFSNGPFNCSEPISLTNLNYPSITVPKLSRSITITRRLKNVGSPGTYKAEIRKPAGISVWVKPKTLNFTRLGEEQSFKVFMKVKEQNVGRENYVYGDLIWSDGKHHVRSPIVVKVV 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2939845 2949687 + CcPI632755_02g003220.1 Cco02g0322 171079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0322 737 Pfam Fibronectin type-III domain 638 734 IPR041469 -
Cco02g0322 737 ProSiteProfiles Serine proteases, subtilase domain profile. 83 593 - -
Cco02g0322 737 FunFam Subtilisin-like protease SBT5.3 1 79 - -
Cco02g0322 737 ProSitePatterns Serine proteases, subtilase family, serine active site. 524 534 IPR023828 -
Cco02g0322 737 Gene3D Peptidase S8/S53 domain 110 606 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco02g0322 737 Pfam Peptidase inhibitor I9 12 79 IPR010259 -
Cco02g0322 737 FunFam Subtilisin-like protease SBT1.5 110 330 - -
Cco02g0322 737 FunFam p69E protein-like 610 737 - -
Cco02g0322 737 CDD PA_subtilisin_like 325 455 - -
Cco02g0322 737 SUPERFAMILY PA domain 377 452 IPR046450 -
Cco02g0322 737 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 733 IPR045051 -
Cco02g0322 737 FunFam subtilisin-like protease SBT1.5 318 462 - -
Cco02g0322 737 CDD Peptidases_S8_3 77 560 IPR034197 -
Cco02g0322 737 Gene3D - 318 462 - -
Cco02g0322 737 Pfam PA domain 366 439 IPR003137 -
Cco02g0322 737 SUPERFAMILY Subtilisin-like 101 597 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco02g0322 737 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 79 IPR037045 -
Cco02g0322 737 PRINTS Subtilisin serine protease family (S8) signature 108 127 IPR015500 -
Cco02g0322 737 PRINTS Subtilisin serine protease family (S8) signature 184 197 IPR015500 -
Cco02g0322 737 PRINTS Subtilisin serine protease family (S8) signature 523 539 IPR015500 -
Cco02g0322 737 Pfam Subtilase family 108 562 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco02g0322 737 Gene3D - 610 737 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1244 Cco-Chr1:19124208 Cco02g0322 Cco-Chr2:2939845 2.80E-169 dispersed
Cco01g1247 Cco-Chr1:19197219 Cco02g0322 Cco-Chr2:2939845 3.80E-245 dispersed
Cco02g0322 Cco-Chr2:2939845 Cco10g0393 Cco-Chr10:4601647 3.50E-248 dispersed
Cco02g0322 Cco-Chr2:2939845 Cco08g1821 Cco-Chr8:29245173 7.70E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0322 - - - 0.0