Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0328 ATGATCAGAAAACGTGATGATCTGAGTGAAATAAGATTGGGTTATAGGGTTTCTCAAAGGAAATCTAGGGCACCCGCGGATGGATCGGTGGAGGGAAGGAGTTATGACAGCGATAGGCCATCTGAATCTTCATGGGGTCTGGAATTTCCCATTGCCATATCACAAATCTATGGCTCTGTTTCACTTTCATGCGGTCTTCTTTGGAGCAGATATTTCTGTTCACCAATGAAAATGATGAACCGGACAAATTTCATACTTACATTTTGTACACATGCAAGAGAAAAAGATCAGAAAATGGATGAGAAGAGAGAAACCAAAGAGCCATCAAGCTCTAATCTCTCATCTTCTGCTCATCAAATCAGGCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATGGCCATTCCAAGGGGGATAGTGATGCGACTCATGAGCAGGATGAGGCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAATGAAAACTTTAATATAACAGAAACGTACACAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTACTGAACTCTTGGAAACAAACATAACAAAAAGGACTGCAGAGGAGAACAAGATTGATCGTTTATCATCGCTGCAACTGACATATGTGATCTCAGATGCAACAAAACCAGATTGCCCCATCATGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGCTATACACTGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAAACAGATAAGAATGAAGTCGCCAAAATACGAGATGCAATTAGAAAGGGGACTAGTTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAACATCATCAAATTTATTGGAATGCAGGTTGAGATTGCCAAAAACACAGAAGAAAAAGAGAGAACCATGAAGTCCATGTCCATTACGGAGCTCCAAGCTGTGAAAAGTCTAAGATCTCACATTCAGTCAAAAAGGCATGATGCTGATACAAAGCACGAAGAGCCAGAAATGATTGATGCTGATTATGCTCTGTACAAGGCTCTGGATATTGATGAGAATATTAGCACATCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCTAGGTTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGGCATCTGTTTTCAAGCCCAGGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGACATATGTCAAGGAATTGAGTTGGCTACCACATTGGAAAGGATTGAGAAGATATTTTTTATCACTAACCCAAGACTTCCTGATAATCCTATTATATTCGCATCTCATAGGTTTCTTGATTCTACAGAATACTCATGTGAAGAAATTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAGGCAACTGTCTCAAAGATAAACAATGCGATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTCGAATGTATTCCACTTGCAACCCATGTGGGATCAAAAGAAGGGGGAGCTTCAATATTTCATTGCGGCACAACTTCATCTAAAACCTTCAAGAGGCTGGCTTTTAGATCAAACGGAGCATGAAAGTGCTAAGCTGGCCAAAGCTGTAGCTGAGAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTCTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATTGGACTCCATCATTTTAAGCCAATAAGACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATCTCGTACAACTAAACGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAAAAGTCAGTAATATTAAATCGAAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTCTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCCTACGCACATTTTTCTTATTATGGACTTCTGCCCCGGTGGAGAGTTATTTACATTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTATCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCCGAAAATATTCTACTCCAGAAAGATGGACATATCATCCTCACTGATTTTGATTTATCGTTTAAGACGTCTAGCATACAAACCATAGAATCTTCAACCCCAAGAAAGAAGACATGTAGCCATAAATCACTGCCGATGGTCGTCGTTGAACCTATGGCAGAACTGAATTCATTCATTGGAACTGAAGAGTACATTGCCCCGGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAAACAGGAATAAAACTTTTGCCAATATTTTGTTCAAGGACTTGACCTTCCCCATTAGTATTCAGCTGCTGCTCATGCTTAATATGCAGGCAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAGAGAGACCCTGCACATCGTCTAGGATCGAGGACCGGTGCTGATGAAATCAAACGACATCCATTTTTCCGTCAAATAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAATGCTCAGTCTTTCAATGGATGCTGCTGATATTTTCTGA 2946 41.51 MIRKRDDLSEIRLGYRVSQRKSRAPADGSVEGRSYDSDRPSESSWGLEFPIAISQIYGSVSLSCGLLWSRYFCSPMKMMNRTNFILTFCTHAREKDQKMDEKRETKEPSSSNLSSSAHQIRPTEKRTPIEVFQVPASSGDGHSKGDSDATHEQDEAKSSLSSFRPAASMEASRKWMAFENENFNITETYTKNFSGSFGSYSTELLETNITKRTAEENKIDRLSSLQLTYVISDATKPDCPIMFASNRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGTSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIAKNTEEKERTMKSMSITELQAVKSLRSHIQSKRHDADTKHEEPEMIDADYALYKALDIDENISTSDNQKARFKERTLGSAVEREEKTVVEASVFKPRDGDCVAKRERDICQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYSCEEILGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSGKKFSNVFHLQPMWDQKKGELQYFIAAQLHLKPSRGWLLDQTEHESAKLAKAVAENVDKAVRELPDANLKPKNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGEKIGLHHFKPIRPLGFGDIGSVHLVQLNGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSSIQTIESSTPRKKTCSHKSLPMVVVEPMAELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILFKDLTFPISIQLLLMLNMQASLAAKQLIDALLQRDPAHRLGSRTGADEIKRHPFFRQINWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLSLSMDAADIF 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2989299 3003212 + CcPI632755_02g003280.1 Cco02g0328 171085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0328 981 MobiDBLite consensus disorder prediction 144 158 - -
Cco02g0328 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0328 981 MobiDBLite consensus disorder prediction 97 165 - -
Cco02g0328 981 CDD PAS 241 330 IPR000014 -
Cco02g0328 981 Gene3D Transferase(Phosphotransferase) domain 1 723 946 - -
Cco02g0328 981 PANTHER FLIPPASE KINASE 1-RELATED 586 948 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco02g0328 981 ProSiteProfiles Protein kinase domain profile. 639 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0328 981 ProSiteProfiles PAC domain profile. 288 342 IPR000700 -
Cco02g0328 981 SUPERFAMILY PYP-like sensor domain (PAS domain) 235 328 IPR035965 -
Cco02g0328 981 CDD STKc_phototropin_like 637 946 - -
Cco02g0328 981 Pfam Protein kinase domain 642 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0328 981 SUPERFAMILY Protein kinase-like (PK-like) 616 958 IPR011009 -
Cco02g0328 981 SMART pas_2 216 285 IPR000014 -
Cco02g0328 981 SMART pas_2 443 512 IPR000014 -
Cco02g0328 981 SMART serkin_6 639 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0328 981 SUPERFAMILY PYP-like sensor domain (PAS domain) 456 552 IPR035965 -
Cco02g0328 981 Gene3D PAS domain 430 591 - -
Cco02g0328 981 ProSiteProfiles PAS repeat profile. 214 287 IPR000014 -
Cco02g0328 981 CDD PAS 455 550 IPR000014 -
Cco02g0328 981 Gene3D PAS domain 229 387 - -
Cco02g0328 981 FunFam Serine/threonine-protein kinase nrc-2 723 949 - -
Cco02g0328 981 Pfam PAS domain 463 553 IPR000014 -
Cco02g0328 981 Pfam PAS domain 235 330 IPR000014 -
Cco02g0328 981 MobiDBLite consensus disorder prediction 17 43 - -
Cco02g0328 981 NCBIfam PAS domain S-box protein 241 338 IPR000014 -
Cco02g0328 981 NCBIfam PAS domain S-box protein 467 552 IPR000014 -
Cco02g0328 981 SMART pac_2 291 333 IPR001610 -
Cco02g0328 981 SMART pac_2 518 561 IPR001610 -
Cco02g0328 981 Gene3D Phosphorylase Kinase; domain 1 638 722 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0328 Cco-Chr2:2989299 Cco02g2217 Cco-Chr2:34759185 2.70E-235 dispersed
Cco06g1864 Cco-Chr6:28871758 Cco02g0328 Cco-Chr2:2989299 3.00E-55 transposed
Cco02g0328 Cco-Chr2:2989299 Cco02g1154 Cco-Chr2:19883135 7.40E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86549 PF00069 Pkinase 1.10E-62 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0328 K20715 - csv:101213364 1548.87