Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0335 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGAGGGAGTGGGAGGGAGGGAGATGACTACTCTATGGGTATTGTGCATCATTCCATTGAGGATGAGGAAATGGTTGATAGCCCTCCTCTCAGCAGTCTTGGTGGTGGTGCTGGCAGTGGTGAGATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGATGGAATGGAATTTGAGTCTGAAGAAGCTGCCAAGGCTTTCTATAATTCATATGCTCGGCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATATGAATGAGAAGCGAACTAAAGACAGAGAAATTAAGCGTCCTCGAACCATCACAAGAGTAGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTATCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCTAACTTCTTCTATGCTGTTCAGGGTGAGGAGGATCAGTGTGTGGGCAATGTCTTTTGGGCCGATCCAAAAGCTCGGATGAACTATACTTACTTTGAGAGTCGGAATGAGAAGGAAGTGAAAGCAGATTATGATACGATGAACACTTCCCCTGTTCTAAAGACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGGTTCCAAGAGGAGTTAGTTGGCACACTAACTTTTATGGCTTCGAAAGCTGATGATGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGAGAGGATCATAAAGCTCACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTCTCAGGTCTTCTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTACTACATATTGAAACGATGGACAAGAAACGCAAAAAGTAATGTGATATTGGAGGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTGCGCCACGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGACTCTGGATATGTATAATGTGGCTAAACATGCCCTTCAGGAGGCTGCTAAAAGGGTTGCTCATACGACGAGGAATGATGGCAAAATTTCTACAATCAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAGAAGCTATAAAAATCACAGTGGTAGCAGGGATCATGACGAGAGCTTGAGTAAAAGCATGTCTGAGGATGACTTGGACAAGAAAATCAATGAACTTACTAATGAATTGGCGTGTGCTAATCGGAATGGTGCGTTCACCGATTTGAGTCCCCCCAAGTCTAAAAGAAAACTACACGGGGAGAAAATAACTGATCAGGATCCATGTTCCGAACACAGCATATTTTCTACATCAATTTATGAGGAGTTCAAGTTGACACAGGTAACCAAACTGCCACGTAAAAAGAAACAGAAAGAATTAGGTCTTGGTGGGAGACCAGATGGTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTGCTTCTGCTTCTGCTTTTTTTCTTCTCTAA 1899 41.86 MDNEVIEFDIGLGGGSGREGDDYSMGIVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYDGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNVLTLPSYYILKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTLDMYNVAKHALQEAAKRVAHTTRNDGKISTINGRIKVDPVNVRSYKNHSGSRDHDESLSKSMSEDDLDKKINELTNELACANRNGAFTDLSPPKSKRKLHGEKITDQDPCSEHSIFSTSIYEEFKLTQVTKLPRKKKQKELGLGGRPDGFFFSSSSSSSASASAFFLL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3042596 3046823 - CcPI632755_02g003350.1 Cco02g0335 171092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0335 632 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 290 IPR031052 GO:0006355(InterPro)
Cco02g0335 632 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Cco02g0335 632 MobiDBLite consensus disorder prediction 511 529 - -
Cco02g0335 632 Pfam SWIM zinc finger 377 402 IPR007527 GO:0008270(InterPro)
Cco02g0335 632 MobiDBLite consensus disorder prediction 508 529 - -
Cco02g0335 632 ProSiteProfiles Zinc finger SWIM-type profile. 373 405 IPR007527 GO:0008270(InterPro)
Cco02g0335 632 SMART 26again6 380 407 IPR006564 GO:0008270(InterPro)
Cco02g0335 632 MobiDBLite consensus disorder prediction 549 574 - -
Cco02g0335 632 Coils Coil 528 548 - -
Cco02g0335 632 MobiDBLite consensus disorder prediction 557 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0335 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0335 Cco-Chr2:3042596 Cco03g1467 Cco-Chr3:29272922 3.20E-80 dispersed
Cco07g1739 Cco-Chr7:31471296 Cco02g0335 Cco-Chr2:3042596 2.40E-26 transposed
Cco09g0754 Cco-Chr9:6935026 Cco02g0335 Cco-Chr2:3042596 3.50E-22 transposed
Cco09g0785 Cco-Chr9:7234597 Cco02g0335 Cco-Chr2:3042596 2.20E-29 transposed
Cco10g1703 Cco-Chr10:30564831 Cco02g0335 Cco-Chr2:3042596 1.40E-27 transposed
Cco02g0335 Cco-Chr2:3042596 Cco02g1163 Cco-Chr2:20296741 3.00E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58707 PF03101 FAR1 4.20E-34 CL0274 Cco TF