Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0337 ATGTCCGATTTGAACTCCGCCGTCCACGGCGGCTCCTCTCGTTACGCCGATCAATTTCTCGGTTCAGAGCTCCAACTTCAAAATTTCTCACAAACCCATCTCGCCGATCCCAACAACTCGCCGGAAAGTCACCAGAAAAATCTCAATCCGGCCGATTCAACCACCCCCACTAGCGGCGGTTTGTCCACGCGCCGTTCTCGTGGCCGCCCCGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATTGTAACACGTGACAGCCCCAATGCTCTGAGATCGCACGTGCTGGAAGTCTCCGCCGGCTCCGATGTGGTCGAATCCGTCTCGAGTTACGCCACGCGCCGCCGCCACGGCGTTTGCATTCTCGCCGGCACCGGCGCCGTCACAAACGTCAACTTGCGCCAGCCGGCGGCGCCGTCGGGAACTGTTATGACGCTTCATGGAACGTTTGAGATTGTGTCTCTGACTGGTACGGCGTTGCCACCGCCGGCGCCTCCGGGTGCCGGAGGGATAACTGTTTATTTGTCCGGCGGGCAAGGGCAGGTCGTCGGAGGAAGTGTCGTCGGGCCGTTGACGGCGTCAAGTCCCGTTGTATTGATGGTGGCGTCGTTTACTAATGCGGTGTATGATCGGCTGCCGCTGGACGAGGCCGAGCCGCCGGTGCAAGCTCAGCCATCGGCATCACCATCTTCAGATATTACAGGTGGAGGCGGACAGCTTGGGGGCATCGGAAGCTTCAACCTGCCCGACGACAATTACGGTTGGAATGGCAATACATCGAGGCCTCCGACGACGCTGTGA 801 59.93 MSDLNSAVHGGSSRYADQFLGSELQLQNFSQTHLADPNNSPESHQKNLNPADSTTPTSGGLSTRRSRGRPAGSKNKPKPPVIVTRDSPNALRSHVLEVSAGSDVVESVSSYATRRRHGVCILAGTGAVTNVNLRQPAAPSGTVMTLHGTFEIVSLTGTALPPPAPPGAGGITVYLSGGQGQVVGGSVVGPLTASSPVVLMVASFTNAVYDRLPLDEAEPPVQAQPSASPSSDITGGGGQLGGIGSFNLPDDNYGWNGNTSRPPTTL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3060265 3062434 - CcPI632755_02g003370.1 Cco02g0337 171094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0337 266 CDD DUF296 92 158 IPR005175 -
Cco02g0337 266 MobiDBLite consensus disorder prediction 27 64 - -
Cco02g0337 266 FunFam AT-hook motif nuclear-localized protein 91 220 - -
Cco02g0337 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 220 - -
Cco02g0337 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 206 IPR005175 -
Cco02g0337 266 MobiDBLite consensus disorder prediction 217 266 - -
Cco02g0337 266 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
Cco02g0337 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 235 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cco02g0337 266 MobiDBLite consensus disorder prediction 27 88 - -
Cco02g0337 266 MobiDBLite consensus disorder prediction 251 266 - -
Cco02g0337 266 Gene3D - 91 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0337 Cco-Chr2:3060265 Cco06g0033 Cco-Chr6:328259 6.40E-59 dispersed
Cco02g0337 Cco-Chr2:3060265 Cco02g1816 Cco-Chr2:31046943 4.90E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0337 - - - 0.0