Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0342 ATGGCAAGCTTCACGGTAGGTTGTTGGGCATTCGGTTCTTCGTGGGGTAGTGGTTGCTATCAAGCTAAACGTAGACGCTTTGTGCGTATCAACAGTCGTTGTCTTTTGAATTTGGAGGGCTTCTTCAAGGCTTTATGTTCTTCTGAAATGGCTGCCTTTGTAGCTATAATAGTCTTCTATTTGGTTCTTCTGCAAACACCCACCAACATATTTGCGGTTAAGGATGAAGAAGAGTGGAAATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCAATTGTTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATAAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACGGCCACCGACTTCTGTCCTCCCAATTACGGCTTCTCTTCCGATTATGGTGGTTGGTGTAATTTTCCCAAGGAACACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTCTCGCTTCTTTCAAGTGCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTCAAAGTAAAAGGATCAAGAACAGGATGGATACCACTGGCAAGAAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGACAACCTCTCTCTTTTGAAGTTACCTCCAGTAGTGGAAGAGCACTTACTTCCTACAGCGTTGCACCTGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA 912 43.75 MASFTVGCWAFGSSWGSGCYQAKRRRFVRINSRCLLNLEGFFKALCSSEMAAFVAIIVFYLVLLQTPTNIFAVKDEEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGFSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQFGQTFEGKQF 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3135073 3139587 - CcPI632755_02g003420.1 Cco02g0342 171099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0342 303 PRINTS Expansin signature 109 123 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 210 222 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 186 199 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 257 278 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 136 147 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 169 186 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 222 243 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 150 160 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 PRINTS Expansin signature 286 302 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 SUPERFAMILY PHL pollen allergen 208 300 IPR036749 -
Cco02g0342 303 SMART dpbb_1 114 201 IPR007112 -
Cco02g0342 303 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 221 300 IPR007117 -
Cco02g0342 303 PRINTS Expansin/Lol pI family signature 286 300 IPR007118 GO:0005576(InterPro)
Cco02g0342 303 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576(InterPro)
Cco02g0342 303 PRINTS Expansin/Lol pI family signature 194 210 IPR007118 GO:0005576(InterPro)
Cco02g0342 303 PRINTS Expansin/Lol pI family signature 78 93 IPR007118 GO:0005576(InterPro)
Cco02g0342 303 PRINTS Expansin/Lol pI family signature 118 136 IPR007118 GO:0005576(InterPro)
Cco02g0342 303 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576(InterPro)
Cco02g0342 303 Gene3D - 65 207 IPR036908 -
Cco02g0342 303 Pfam Lytic transglycolase 115 201 IPR009009 -
Cco02g0342 303 CDD DPBB_EXPA_N 78 206 - -
Cco02g0342 303 Pfam Expansin C-terminal domain 212 289 IPR007117 -
Cco02g0342 303 Gene3D - 208 303 IPR036749 -
Cco02g0342 303 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 97 211 IPR007112 -
Cco02g0342 303 PANTHER EXPANSIN-A15 54 303 IPR002963 GO:0009664(InterPro)
Cco02g0342 303 SUPERFAMILY Barwin-like endoglucanases 78 229 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0342 Cco-Chr2:3135073 Cco02g2145 Cco-Chr2:34230991 2.30E-73 dispersed
Cco02g0342 Cco-Chr2:3135073 Cco03g0148 Cco-Chr3:1469472 6.20E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0342 - - - 0.0