Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0363 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAACAGCAAGACCAGAAGCAAAAACAAAACCACCAAACCAAACGAATCAACAACTCCACCACAATTTCCAACCCTAATTACGCTTCCCCAACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACACCGACGAACTCACTCCCGAGGAGGTCGCTGATGACCACGAGGATGCTGAATACAACGAAGAATTGGCTGGGAACGGCCGCGAGAAAAAACTCAAGCTCGTCCTTAGATTGCACTCCCAGAAATCCCCAGTCAATTCCTCGTCTCTCAATTCTTGTGGTTCCGATTCTAATGCGGAGGGAGATGGTAATGCTGCCTGGATTAACAAGAAGCGGAAGATCGGTTCGATTGGGGAGGGATCTAGGATCCAAGACTCTGAGAAGGGTGAAAAGTCCATTTCTGCTACAAACCCATCAGAAACCCTTCAAGGGGTGCATATGGATTCGGGACCCTCGACGCCTTTACCAGATAAGAAGCTTTTAGTCTTCATCCTCGACAGGCTTCAAAAGAAGGACGTCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCACGAAATTATAGATCATCCGATGGATTTTGGAACTGTACGGGAGAAGCTTACTTCTGGATCTTATAGCACCTTGGAACAGTTTGAAAAAGATGTCCTCTTAATCAGTTCGAATGCAATGCAATATAATTCCCCAGATACTATATATTTTCGGCAGGCACGTACCATACAAGAATTAGCAAAAAAGAATTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCGCCGACCAAGAATTTAAAAAAACCATTAGGTAGACCCTCCTTGGAACGCGCTGGTTCAGAGTTTTCCCCAGATGCCACTCTTGCTACTGGTGGTGAAAACACAAATCGGTCCAGTGATTTGAGGAAAGGACTTCATAATTTGGAAAAGCCTAGTTTTGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCTAATAGTGATGCTGCATTTAATTTGTTTAACCAGAGCAGATTTGATAGAAGCGAGGATATTACAGGTTCTGCGCTGAGATTTAATTCCGTGAGACAGGGGAAAAAACCTATTGTCTCCGAGGAGAATAGGCGAAATACATATAAGCAATTTCAAGAGGCAGCTGCTTTGCTAGAGCCCTCTGTGTTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGACTTTTCTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTTGCTGCAGATCTTGGATCTGTAGCTTGGACAGTTGCTTCTAAGAAGATTGAAAGATCTTTGCCTTCAGGTTCAAGTTTTGGTCCTGGATGGGTTGTTGAAAATGATACCACACCAAAGAGGGTGTTTCTACCACAAGCTGCACTTTGTCAAATGTCGACGTTGCAGCCCTTTCTTGGGCCTGAAAGTTCGGATCCAGATGTAAAGCCTCTTACTCCTGAACAAAAGGGGGTTCGATCATCTGATAACTCTGAAGCTGATACATCATCCAAGACGCATGACGAGCCTTCTCGTGCCCCCAGTTCAGATGGCCAGATAAACAGGCCTCCCACTGAGTTTGCTGCAGCTTCGTCACCACCATCAAGTACTCGACGATCTTCTGAGCCCTGCAAGGGACAGGCGGAAACAGTTGAAGGATCAAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCGAGGCCTTCATTTCAGAAACACCATCCAACAATCCGCCCTGGTATGAATGGATTCAATGGTGCTTATGGTTTTGATCCCTCTGCTCACAGGGGGAAACTAATCAGACCGTCTGAGCCTGCTGGTGTAAAGCCTCAGTCATCTCAAATGCTTGAGATGATCTCCAGGACCAATGCTAATTTCATCCTTCCAGCAACAACGACCAGCCTGAATCTGAAAGAACTGAAATGTCCCGAAAATAATCCTAGCACAACAAACTCTTCCAGTTTATTGGTTGGGTCGGAGAATTACGCTCTTGTCAACCCAGCAACCGGTCCGCATTCACGAACACATTGGCAGCAGGGGCCATCACCACCAGAGAAAACAGATGCAGTAGTAACAACAATATACAAACCGGAATCGGTTCCCCCGGACCTGAATGTTAGATTTAAATCTCCAGGATCTCCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTGGTTTTACAGCTCTGA 2340 45.68 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEQQDQKQKQNHQTKRINNSTTISNPNYASPTPLRRSTRRNPNTDELTPEEVADDHEDAEYNEELAGNGREKKLKLVLRLHSQKSPVNSSSLNSCGSDSNAEGDGNAAWINKKRKIGSIGEGSRIQDSEKGEKSISATNPSETLQGVHMDSGPSTPLPDKKLLVFILDRLQKKDVYGVFSEPVDPNELPDYHEIIDHPMDFGTVREKLTSGSYSTLEQFEKDVLLISSNAMQYNSPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDATLATGGENTNRSSDLRKGLHNLEKPSFADFSGRFSFSSNSDAAFNLFNQSRFDRSEDITGSALRFNSVRQGKKPIVSEENRRNTYKQFQEAAALLEPSVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWTVASKKIERSLPSGSSFGPGWVVENDTTPKRVFLPQAALCQMSTLQPFLGPESSDPDVKPLTPEQKGVRSSDNSEADTSSKTHDEPSRAPSSDGQINRPPTEFAAASSPPSSTRRSSEPCKGQAETVEGSNPSSDYNVLESSIPISRPSFQKHHPTIRPGMNGFNGAYGFDPSAHRGKLIRPSEPAGVKPQSSQMLEMISRTNANFILPATTTSLNLKELKCPENNPSTTNSSSLLVGSENYALVNPATGPHSRTHWQQGPSPPEKTDAVVTTIYKPESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3315858 3320538 + CcPI632755_02g003630.1 Cco02g0363 171120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0363 779 CDD Bromodomain 189 283 - -
Cco02g0363 779 Gene3D - 187 304 IPR036427 GO:0005515(InterPro)
Cco02g0363 779 MobiDBLite consensus disorder prediction 150 185 - -
Cco02g0363 779 ProSitePatterns Bromodomain signature. 207 263 IPR018359 -
Cco02g0363 779 ProSiteProfiles Bromodomain profile. 201 271 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 MobiDBLite consensus disorder prediction 17 42 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 1 16 - -
Cco02g0363 779 Coils Coil 18 45 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 286 348 - -
Cco02g0363 779 SUPERFAMILY Bromodomain 182 294 IPR036427 GO:0005515(InterPro)
Cco02g0363 779 Pfam Bromodomain 196 275 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 778 IPR051831 -
Cco02g0363 779 MobiDBLite consensus disorder prediction 515 605 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 1 101 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 113 136 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 113 131 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 558 605 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 43 68 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 286 305 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 716 735 - -
Cco02g0363 779 PRINTS Bromodomain signature 252 271 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 PRINTS Bromodomain signature 204 217 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 PRINTS Bromodomain signature 234 252 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 PRINTS Bromodomain signature 218 234 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 SMART bromo_6 182 290 IPR001487 GO:0005515(InterPro)
Cco02g0363 779 MobiDBLite consensus disorder prediction 716 779 - -
Cco02g0363 779 MobiDBLite consensus disorder prediction 162 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0363 K22184 - - csv:101218234 1286.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0363 Cco-Chr2:3315858 Cco02g1922 Cco-Chr2:32109328 3.60E-09 dispersed
Cco09g1090 Cco-Chr9:10406076 Cco02g0363 Cco-Chr2:3315858 8.10E-74 transposed
Cco11g1380 Cco-Chr11:26612480 Cco02g0363 Cco-Chr2:3315858 6.50E-08 transposed
Cco11g1927 Cco-Chr11:31952428 Cco02g0363 Cco-Chr2:3315858 2.60E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39