Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0370 ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTGACCATTCCTTTTGAACTACAAATGATCGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATCACTCCGCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAAAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCCGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA 855 44.44 MNAHINSVSIASSSSSPLDLTIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3362422 3363276 - CcPI632755_02g003700.1 Cco02g0370 171127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0370 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 31 282 - -
Cco02g0370 284 MobiDBLite consensus disorder prediction 34 74 - -
Cco02g0370 284 SUPERFAMILY beta-beta-alpha zinc fingers 80 188 IPR036236 -
Cco02g0370 284 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Cco02g0370 284 Gene3D Classic Zinc Finger 39 193 - -
Cco02g0370 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Cco02g0370 284 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cco02g0370 284 SMART c2h2final6 166 188 IPR013087 -
Cco02g0370 284 SMART c2h2final6 79 101 IPR013087 -
Cco02g0370 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Cco02g0370 284 Pfam C2H2-type zinc finger 165 189 IPR013087 -
Cco02g0370 284 Pfam C2H2-type zinc finger 81 103 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0370 Cco-Chr2:3362422 Cco02g1084 Cco-Chr2:14926941 1.10E-24 dispersed
Cco02g0370 Cco-Chr2:3362422 Cco06g1778 Cco-Chr6:28215971 1.70E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58708 PF13912 zf-C2H2_6 6.90E-10 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0370 - - - 0.0