Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0370 | ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTGACCATTCCTTTTGAACTACAAATGATCGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATCACTCCGCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAAAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCCGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA | 855 | 44.44 | MNAHINSVSIASSSSSPLDLTIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3362422 | 3363276 | - | CcPI632755_02g003700.1 | Cco02g0370 | 171127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0370 | 284 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 31 | 282 | - | - | |
Cco02g0370 | 284 | MobiDBLite | consensus disorder prediction | 34 | 74 | - | - | |
Cco02g0370 | 284 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 188 | IPR036236 | - | |
Cco02g0370 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 188 | IPR013087 | - | |
Cco02g0370 | 284 | Gene3D | Classic Zinc Finger | 39 | 193 | - | - | |
Cco02g0370 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 193 | IPR013087 | - | |
Cco02g0370 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 81 | 101 | IPR013087 | - | |
Cco02g0370 | 284 | SMART | c2h2final6 | 166 | 188 | IPR013087 | - | |
Cco02g0370 | 284 | SMART | c2h2final6 | 79 | 101 | IPR013087 | - | |
Cco02g0370 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 79 | 106 | IPR013087 | - | |
Cco02g0370 | 284 | Pfam | C2H2-type zinc finger | 165 | 189 | IPR013087 | - | |
Cco02g0370 | 284 | Pfam | C2H2-type zinc finger | 81 | 103 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0370 | Cco-Chr2:3362422 | Cco02g1084 | Cco-Chr2:14926941 | 1.10E-24 | dispersed | |
Cco02g0370 | Cco-Chr2:3362422 | Cco06g1778 | Cco-Chr6:28215971 | 1.70E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58708 | PF13912 | zf-C2H2_6 | 6.90E-10 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0370 | - | - | - | 0.0 |