Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0371 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGATGGCGTTGGTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCGGTGACGACGAGTCTAGATTCCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACGATTCACATGGTTCGTGGTTTTGCACAAGCTTCATCAACACCTCCTGCGCCTGCTTCTAATGTTAATAGTAGAAGTTCTGACGCTGCTCCTGGTGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGATTGGGTTTCAATCCTCTCGGTGGGGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTCAATGACCCTGGAATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATCGAATCTTCTCCAGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGGGGCGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAACTGCTGCTCCGAATACAAATCCACTTCCTAATCCATGGGGAGGAATTCAGACCACAACCACACAGCCTACTCCAGCAGGTGATGCAAGGGCTCCTGGTATTGGGGCTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGATTTGCTGGTGCTGTGCCAGACCCGGCTCAGCTGAACCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGCCTACTCTCCAACCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCGATCCAGCAGAGCCTCCTCTCTACCTTAAATCGGCAGCCATCATCTCAAGATTCTGCTCAAACAGGTGCTGCTGCAGGTGTTCCTAGCACTGCTGGATTGGAGATGTTAATGAACCTCTTTGGTGGGCTCGGTGCTGGTGGGTTGGCTGTTCCGAACAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTCTCACAGCTCCAAGAGATGGGTTTCTTTGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCATGCCGCTGTCGAGCGACTGCTGGGAAATCTCGGGCATTCTTTGATGAAATTGAACATTCTTTCTGATCCTAATGACGGCCGCAAAGATTTCGCCGTGATAAGATACGCCGAATCGAAGAATCGACCTGCCGTTCAAGGAACGCCGGCGAGTCACCGCAGCGGTGGACGATACGCTGACGGGACGCACGGGACTCCGAAGTCACGTGCCTTCCCCGTGCTTCTGCTGTACAGTTCCCTAGGGTTTATTCCGGATTCGGGTAAGAAATCCCCCTCTTTCGTCTTTCTGACCAATCAGTTGGATGAAGCTCTACGGCGTCGTTTATTGACTATTCTGTTGTTCTGTGGTTCTGTTTTCTTCGTGATAGTCATGTATCTCATTAGTATTTTTGAAACTTTGATTTCCATTTCTCCTCCTCGCCTTTCTTCCATTTGGGTTTGCGGAGTTGACTCAGTTTCCTTCTTCGGTGAGATTAGTTGTGGCTTCGGTACCCTTTGGCTATACAGGATTGCGAATGAACCTCCCGGCTAG 2133 47.21 MGADGDSSEHRVDGVGEEGGVSVTVNIRCSNGSKFSVTTSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPPAPASNVNSRSSDAAPGVTRGVGSNESGAFGNAGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGTAAPNTNPLPNPWGGIQTTTTQPTPAGDARAPGIGALGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQDSAQTGAAAGVPSTAGLEMLMNLFGGLGAGGLAVPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGHSLMKLNILSDPNDGRKDFAVIRYAESKNRPAVQGTPASHRSGGRYADGTHGTPKSRAFPVLLLYSSLGFIPDSGKKSPSFVFLTNQLDEALRRRLLTILLFCGSVFFVIVMYLISIFETLISISPPRLSSIWVCGVDSVSFFGEISCGFGTLWLYRIANEPPG 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3371336 3378860 + CcPI632755_02g003710.1 Cco02g0371 171128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0371 710 CDD UBA_PLICs 505 543 - -
Cco02g0371 710 Pfam Ubiquitin family 25 93 IPR000626 GO:0005515(InterPro)
Cco02g0371 710 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515(InterPro)
Cco02g0371 710 MobiDBLite consensus disorder prediction 578 597 - -
Cco02g0371 710 MobiDBLite consensus disorder prediction 100 117 - -
Cco02g0371 710 MobiDBLite consensus disorder prediction 97 122 - -
Cco02g0371 710 Gene3D - 21 106 - -
Cco02g0371 710 SMART CBM 373 402 IPR006636 -
Cco02g0371 710 SMART CBM 200 239 IPR006636 -
Cco02g0371 710 SMART CBM 148 187 IPR006636 -
Cco02g0371 710 SMART CBM 406 441 IPR006636 -
Cco02g0371 710 SMART uba_6 505 543 IPR015940 -
Cco02g0371 710 MobiDBLite consensus disorder prediction 297 353 - -
Cco02g0371 710 Gene3D - 195 253 - -
Cco02g0371 710 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 500 544 IPR015940 -
Cco02g0371 710 MobiDBLite consensus disorder prediction 297 344 - -
Cco02g0371 710 FunFam Ubiquitin domain-containing protein DSK2b 488 546 - -
Cco02g0371 710 CDD Ubl_Dsk2p_like 23 95 - -
Cco02g0371 710 PANTHER UBIQUILIN 20 543 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cco02g0371 710 Pfam UBA/TS-N domain 505 541 IPR015940 -
Cco02g0371 710 SUPERFAMILY Ubiquitin-like 22 109 IPR029071 -
Cco02g0371 710 SUPERFAMILY UBA-like 501 543 IPR009060 GO:0005515(InterPro)
Cco02g0371 710 Gene3D - 487 548 - -
Cco02g0371 710 FunFam Ubiquitin domain-containing protein DSK2b 20 107 - -
Cco02g0371 710 SMART ubq_7 23 94 IPR000626 GO:0005515(InterPro)
Cco02g0371 710 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0371 K04523 - - csv:101210644 923.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0371 Cco-Chr2:3371336 Cco10g0031 Cco-Chr10:387654 1.60E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39