Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0372 ATGACCTACACACCTCCAACATGGGCGACATTAGCTGCTGCTGCATTTGTTATTCTGACTCTTATCCTTTCACTATATCTATTGTTCGAGCACCTTTCTGCATATAAGAATCCGGAGGAGCAAAAGTTTTTGATTGGTGTTATCCTAATGGTCCCAACTTATGGTGTAGAATCGTTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATACTACGCGATTGCTATGAATCCTTCGCAATGTACTGCTTTGGACGATACCTGGTTGCTTGCTTGGGTGGGGAAGAAGGGACTATTGAATTTCTAGAGAGAGAAGGACGTTCAAATACTAAGATGCCTTTATTAGAACATAGCTCAGAAAAGGGAACCATCAAACATGTTTTCCCTATGAACCTGTTTTTAAAGCCGTGGAAAATTGGTGGATGGGTTTACCATATTATCAAAATTGGAATCGTCCAATATATGATGATAAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGGACTTTGGCGTTTATTGTGAAGGAGACTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAATCATGGGCACTATACTGCCTGATTCAGTTCTATACAGTCACAAAGGATGAATTGGTACATATAAAGCCATTGGCCAAATTTTTGATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTGCCTTCGATTTGTTCAGGAGTCCTGTAGCCCAAGGGTTACAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATAGAGATGGCCGTTGCTTCTGTGATTCACTTGTATGTATTTCCTGCAAAACCTTATGAACTTATGGGGGACCGTTATCCTGGAAGTGTTTCTGTTCTTGGCGATTATGCATCTGTCGACTGTCCTTTAGATCCAGATGAGGTCAAGGACAGTGAGCGTCCTACAAAGTTACGCCTACCCCAGCCTGACCTTGAAGACCAAGACCCCAAGATGGGAATGACAATCAAAGAGAGTGTCCGAGATGTTTTTGTTGGTGGTGGGGGCTATATTGTGAGCGACCTGAAATTCACAGTAAACCAAGCAGTTGAACCTGTGGAAAAAGGAATAACAAAGTTCAATGAAAAACTACAGAAGCTCTCCCAAAACATGAAGAAACGTGACAAGGATAAAAGAAGAACCAAGGATGACAGTTGTATTACGTCTCCCACACGAAAAGTCATTCGAGGAATTGATGATCCCCTCCTGAATGGGAGCTTTAGTGATAGTGGGGTTGTAAGGGAAAAGAAGAACCGTCGTAAATCCGGTTATATAAGTGCAGAAAGTGGCGGAGAAAGCAGCAGCGATTACGGTTATGGCAATGGATTGAATGATTCTATGATGGGAGGTCTTCGATCGAGAGACAGAGACTATAGACGAACGGTGAGGAAACCACCGTCTCTTTCGCCTTCGCCGTCGCCGTCGCCGGCCGACTCCATATCCCTAACTCCTCATTCTTTCTTCACCGCCTGA 1542 42.28 MTYTPPTWATLAAAAFVILTLILSLYLLFEHLSAYKNPEEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTIEFLEREGRSNTKMPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHIIKIGIVQYMMIKSLTSILAVVLEDFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELVHIKPLAKFLMFKSIVFLTWWQGVGIALLSAFDLFRSPVAQGLQFKSSVQDFIICIEMAVASVIHLYVFPAKPYELMGDRYPGSVSVLGDYASVDCPLDPDEVKDSERPTKLRLPQPDLEDQDPKMGMTIKESVRDVFVGGGGYIVSDLKFTVNQAVEPVEKGITKFNEKLQKLSQNMKKRDKDKRRTKDDSCITSPTRKVIRGIDDPLLNGSFSDSGVVREKKNRRKSGYISAESGGESSSDYGYGNGLNDSMMGGLRSRDRDYRRTVRKPPSLSPSPSPSPADSISLTPHSFFTA 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3379346 3386000 + CcPI632755_02g003720.1 Cco02g0372 171129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0372 513 MobiDBLite consensus disorder prediction 390 413 - -
Cco02g0372 513 Pfam Organic solute transporter Ostalpha 10 290 IPR005178 -
Cco02g0372 513 Coils Coil 380 400 - -
Cco02g0372 513 MobiDBLite consensus disorder prediction 429 513 - -
Cco02g0372 513 MobiDBLite consensus disorder prediction 390 412 - -
Cco02g0372 513 SMART Solute_trans_a_2 9 290 IPR005178 -
Cco02g0372 513 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 3 405 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Cco02g0372 513 MobiDBLite consensus disorder prediction 314 340 - -
Cco02g0372 513 MobiDBLite consensus disorder prediction 450 464 - -
Cco02g0372 513 MobiDBLite consensus disorder prediction 497 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0372 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0372 Cco-Chr2:3379346 Cco08g0790 Cco-Chr8:19715236 9.90E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35