Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0382 ATGAAACCTAAAACCGAACCGAATAAAACCAAAAAAGTGCGATTGAAGTCCTCTGAAGCAACTTCTTCAACTTCCTCTTTATGCCACAGACTCAGTAGCCTCCAAGATTTGCATGATTGCATTGATGAGTTACTTCTCCTACCTTTCACCCAACAAACTCTTGTAAAAGAGAGTGATAACAAATGGACTGATGACCTGCTAGAAGGATCTTTGAGGGTCTTAGAGTTGTGTGATATTGCTAAGGATGCATTGTTGCAGACAAAAGAATGTGTACGTGAACTAGAGTCGGTTTTTCGTAGAAGAAGAGGTGAAGCTGTTATTGCAAGTAATATTCAGAAATGCTTGAGTTCTAGGAAGATGATAAAGAAGGCAGTCCACAAAGCCTTGAAAGGAATCAAAAGCAACTGTTCTCAGAAAAGTGAAGAAAATTCAGCAACTGTAAGCTTGTTAAAAGAAGTAGAAGCAATCACATTCAGTACTGTTGAATCAGTATTGTCCTTCATAGCAGGACAAAAGTTTCCATCAAAGTTGAGTCGATGGTCTTTTGTCTCCAAGCTGGTACAACCCAAAAGAGTTTCCAGCAAAGATGAAGATTCATATGCAAATGAGGTTGAAATGGTGGATGCCACTCTATCTGCAATTGCCACTGACGCAACTGATAAATCCTTCATCTTGCAGGACAAGCTGAGGCAATTTGAGTCAAAAGCAGACCCAGTTCATCATTTTCAAGATGAGCCAACAAAACTGAATTTTGATGCCACTGCTTCATTGGCCTCTGAAGCCACTTCTTCATCTTCTACTTTGTGCCAAAAACTTGATGGGCTTCAAGATTTGCATAATTGCATTGATAAGTTGCTTCTTTTGCCCCTTACCCATCAAGCTCTTGTTGAGAACAAATCAGTTGATGACTTGCTAGAAGGATCTCTCAAGCTCTTGGACGTGTGTGCTTCGGCTAAGGATGTGTTATCCCAAATGAAGGAATGTGCACATGAACTTGAGTTCGCTTTGCGCAGAAGAAGAGGAGATATTGTAGTTGATGTTCAAAAGTATTTAAACTCAAGGAAGATGATGAAAAAGGCAATCCACAAGGCCTTGAAGGGAATGGAAAAAACAAGTTTCCAAGAAAGTGATGAAAGTTCAGAAATTGTTAGCTTGCTAAAGGAGGCAGAAACCGTTACATATAACAGCATTGAATCCTTGTTGATATTTGTAGCAGGACCAAAGATGCCATCAAAGATGAGCAAATGGTCTTTGGTTTCCAAGTTGATGCAACCTAAGAGAGTAGCCTGCAAAGATGATGGCACATATGGAAATGAAGTAGAGATGGTGGATGCTTCTTTAAATTCAATCATCAATCACAAATTTGATTTCCTTGTTCAAGCCTTTCACTTAAGACCAAGGGTTGAAAGCAGCTTGGAGATTGAGATTATGAAGCATTTGTCTTCAACAAATGTGAGAAATCCACAAGCCATGGTCAAGCCTATTGATGGTTGTGGAATACTACGGGGCATGAACGAGACCCAGTTCACCATTTTCGAGGTGAGCCAACAAAATGGATGCCATTGCCTCGGCTATAGGAAGATGGGCCATGGCAGCCATTTTGAATATGATAATTTGAATATATTGAAGGCCTCTGAAGCCACTTCTTCATCTTCTTCTTTGTGCCAAAAACTTGATGGTCTTCAAGATTTGCATGATTGCATTGATAAGTTGCTTCTTTTGCCACTCACCCATCAAGCTCTTGTTGACAACAAAACAGTTGATGACTTGCTAGAAGGATCTCTCAAGATCTTAGATGTTTCAGAAGTTGTTAGCTTGTTAAAAGAGGCAGAAGCTGTCACATTAAACAACATGGAATCCTTGTTGTCATTTATAGCAGGACCAAAGTTGCCATCAAAGATGAGCAAATGGTCTTTGGTTTCCAAGTTGATGCAACCCAAGAGAGTAGCCTGCAAAGACGATGCCACAGATGGAAATGAAATAGAGATAGTGGATGCTGCATTAAATTCAATCACCAATCACAAATTTGATTTCCTTGTTCAAGCCATGGTTAAGCCTATTGATGGTTGTGGAGTACTGAAACCATAG 2088 39.89 MKPKTEPNKTKKVRLKSSEATSSTSSLCHRLSSLQDLHDCIDELLLLPFTQQTLVKESDNKWTDDLLEGSLRVLELCDIAKDALLQTKECVRELESVFRRRRGEAVIASNIQKCLSSRKMIKKAVHKALKGIKSNCSQKSEENSATVSLLKEVEAITFSTVESVLSFIAGQKFPSKLSRWSFVSKLVQPKRVSSKDEDSYANEVEMVDATLSAIATDATDKSFILQDKLRQFESKADPVHHFQDEPTKLNFDATASLASEATSSSSTLCQKLDGLQDLHNCIDKLLLLPLTHQALVENKSVDDLLEGSLKLLDVCASAKDVLSQMKECAHELEFALRRRRGDIVVDVQKYLNSRKMMKKAIHKALKGMEKTSFQESDESSEIVSLLKEAETVTYNSIESLLIFVAGPKMPSKMSKWSLVSKLMQPKRVACKDDGTYGNEVEMVDASLNSIINHKFDFLVQAFHLRPRVESSLEIEIMKHLSSTNVRNPQAMVKPIDGCGILRGMNETQFTIFEVSQQNGCHCLGYRKMGHGSHFEYDNLNILKASEATSSSSSLCQKLDGLQDLHDCIDKLLLLPLTHQALVDNKTVDDLLEGSLKILDVSEVVSLLKEAEAVTLNNMESLLSFIAGPKLPSKMSKWSLVSKLMQPKRVACKDDATDGNEIEIVDAALNSITNHKFDFLVQAMVKPIDGCGVLKP 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3474340 3484911 + CcPI632755_02g003820.1 Cco02g0382 171139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0382 695 PANTHER OS06G0725500 PROTEIN 539 600 - -
Cco02g0382 695 Pfam Protein BPS1 31 234 IPR004320 GO:0048364(InterPro)|GO:0048367(InterPro)
Cco02g0382 695 Pfam Protein BPS1 601 682 IPR004320 GO:0048364(InterPro)|GO:0048367(InterPro)
Cco02g0382 695 Pfam Protein BPS1 271 462 IPR004320 GO:0048364(InterPro)|GO:0048367(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0382 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0382 Cco-Chr2:3474340 Cco02g0384 Cco-Chr2:3503215 2.50E-139 dispersed
Cco02g0379 Cco-Chr2:3462466 Cco02g0382 Cco-Chr2:3474340 3.10E-13 proximal
Cco02g0380 Cco-Chr2:3464574 Cco02g0382 Cco-Chr2:3474340 3.40E-36 proximal
Cco02g0382 Cco-Chr2:3474340 Cco02g0383 Cco-Chr2:3492328 3.10E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g244 . Blo15g00399 . . . . . Bma12g00903 Cmo19g00799 . . . . . Sed05g2188 . . Bhi05g01617 Tan02g0599 Cmetu01g2685 . . . . Cla02g00372 . . Cco02g0382 Clacu02g0371 Cmu02g0368 Cre02g0701 . . . Cone10ag1225 . Csa07g00160 . Cme01g01176 . . . . . . . . . . . Cma11g01348 . . . . . . . . . . . . . . . . . . . Lsi11g01261 . Chy01g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217