Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0389 ATGCCTTTCTTCCTCCCTCTTCTCTTCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTATTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGACCTCACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTACGGCGCTGGGTGTGGCGCTTGTTTTCAAGTAAGATGCAAGAATGAGAAAATTTGTAGTAAAGAAGGGACGAAAATTATTGTCACAGATCGAAATGATAATACATATACAGGATTGGTTCTTAGTCAGAAGGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTACTGAGTTATGGAGTTGTGGATGTTGAATTCAGAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAATGGAGTCAATATCCTAATTACTTAGCCATTAAATTGCTTAACCAAGGTGGCCAAACGGAAATAGTAGCGATCGATATAGCTCAGGCTGGTTACTCGAATTGGGATTATATGGGTAGGAATTATGGAGCTGTATGGGAGACTAAGAAACCATTACCGAAAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAGTACGTACTTCCTGCTGACTGGAGACCTGGATTGATTTACGATACTGGAGTTCAAATCTCCGACATTGCTAAAGAAGGTTGTCCAACAAAACAATGTGGCGATGGACAATGGAAACAATAG 798 42.98 MPFFLPLLFLSLFSSASACDRCIHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFRRIPCEYNNKNLLVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQAGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQISDIAKEGCPTKQCGDGQWKQ 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3546354 3547593 - CcPI632755_02g003890.1 Cco02g0389 171146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0389 265 Gene3D - 141 245 IPR036749 -
Cco02g0389 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cco02g0389 265 PANTHER EXPANSIN-B3 8 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cco02g0389 265 Pfam Lytic transglycolase 59 133 IPR009009 -
Cco02g0389 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cco02g0389 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cco02g0389 265 Gene3D - 11 140 IPR036908 -
Cco02g0389 265 Pfam Expansin C-terminal domain 150 230 IPR007117 -
Cco02g0389 265 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Cco02g0389 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cco02g0389 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cco02g0389 265 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cco02g0389 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cco02g0389 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0389 Cco-Chr2:3546354 Cco02g0394 Cco-Chr2:3576001 2.40E-98 dispersed
Cco02g0389 Cco-Chr2:3546354 Cco02g0390 Cco-Chr2:3553527 3.20E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0389 - - - 0.0