Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0390 ATGGCTTGGTTTCTTGGTTCTCTCTTTCTCTTTTTCATTTCTTCTGCTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGGGCATGTGGTTATGGCAATGTGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCCCTTTATAGACAAGGAGCTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGGTGCCTTGCGAATACAAATATAAGAATTTGTTGGTGCAAGTGGAAGAAGCAAGTTATAATCCATTTTACTTGGCTATTAAATTCTTGTACCAAGGTGGTCAAACAGATATAGTAGCTGTGGACATAGCTCAAGTAGGCACCTCTGATTGGAGCCATATGAACAGAAATTATGGAGCTGTTTGGGAAACTAACAACATACCTGAAGGAGCATTACAATTGAGGATGGTAGTGACTTCTGGATACGATGGAAAGTGGATTTGGGCAAAATCCGTACTTCCTACTAATTGGAAAAGTGGAGCAATTTACGATACTAGAGTTCAACTTAACGATGTTGCAAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATAACCTATGGAAATGA 789 40.3 MAWFLGSLFLFFISSANACDRCVYQSKASHLYDSPTTYGGACGYGNVALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTVGAKVVLTDQNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVPCEYKYKNLLVQVEEASYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSHMNRNYGAVWETNNIPEGALQLRMVVTSGYDGKWIWAKSVLPTNWKSGAIYDTRVQLNDVAKESCPPWQCGDNLWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3553527 3555603 - CcPI632755_02g003900.1 Cco02g0390 171147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0390 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cco02g0390 262 Gene3D - 13 139 IPR036908 -
Cco02g0390 262 Gene3D - 140 243 IPR036749 -
Cco02g0390 262 CDD DPBB_EXLA_N 14 140 - -
Cco02g0390 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cco02g0390 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cco02g0390 262 PANTHER EXPANSIN-B3 10 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cco02g0390 262 SUPERFAMILY Barwin-like endoglucanases 11 141 IPR036908 -
Cco02g0390 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cco02g0390 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Cco02g0390 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cco02g0390 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Cco02g0390 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cco02g0390 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cco02g0390 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0390 Cco-Chr2:3553527 Cco02g0394 Cco-Chr2:3576001 1.10E-111 dispersed
Cco02g0389 Cco-Chr2:3546354 Cco02g0390 Cco-Chr2:3553527 3.20E-95 tandem
Cco02g0390 Cco-Chr2:3553527 Cco02g0391 Cco-Chr2:3559578 7.50E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0390 - - - 0.0