Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0393 ATGTATTATTGGTTCCTCACCTTCCTGTTCTTGCTCGTCTCCTCTACTACGGCTTCTTTTCCTCCTTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTATCAAGATTCACCTACTTCATATGGAGGTGCTTGTGGTTATGGAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTATAAGGGAGGAGCAGGTTGTGGTGCTTGCTACCAGATAAGATGCAAGGACAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGGCTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGACTCGTCGATGTAGAATACAAGAGGATACCTTGTGAATACAAAAATAAAAATCTATCGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGCGGTTAACTTAGCTCAGGTCGGTTTACAAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAATAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTTTGTGATCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATGGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAA 807 38.29 MYYWFLTFLFLLVSSTTASFPPCNRCVRQSKAAHYYQDSPTSYGGACGYGNLALQISQGYFAAAVPSLYKGGAGCGACYQIRCKDKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALRGKAQQLLNTGLVDVEYKRIPCEYKNKNLSVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNLAQVGLQKWRPMKRNYGPIWDINSVPEGGLQLRMVVTSRYDNGKWIWAGFVIPADWKNGEIYDTGVQINDMAFEYCPPWQCDDGQWK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3571752 3573221 - CcPI632755_02g003930.1 Cco02g0393 171150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0393 268 CDD DPBB_EXLA_N 23 145 - -
Cco02g0393 268 Pfam Lytic transglycolase 63 138 IPR009009 -
Cco02g0393 268 SUPERFAMILY PHL pollen allergen 155 244 IPR036749 -
Cco02g0393 268 SUPERFAMILY Barwin-like endoglucanases 18 147 IPR036908 -
Cco02g0393 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
Cco02g0393 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Cco02g0393 268 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cco02g0393 268 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Cco02g0393 268 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cco02g0393 268 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
Cco02g0393 268 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Cco02g0393 268 Pfam Expansin C-terminal domain 159 234 IPR007117 -
Cco02g0393 268 PANTHER EXPANSIN-B3 8 251 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cco02g0393 268 Gene3D - 15 144 IPR036908 -
Cco02g0393 268 Gene3D - 145 250 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0391 Cco-Chr2:3559578 Cco02g0393 Cco-Chr2:3571752 1.60E-106 dispersed
Cco02g0393 Cco-Chr2:3571752 Cco02g0397 Cco-Chr2:3592563 3.10E-101 dispersed
Cco02g0393 Cco-Chr2:3571752 Cco02g0394 Cco-Chr2:3576001 3.70E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0393 - - - 0.0