Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0394 ATGGCTTGGTTCCTTAGCTTATTCTTCTTCTTCCTTATCTCTTCTGCTACTGCTTGCGATCGTTGTATTCACCGATCCAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGGTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGTTGTGGTGCATGTTTTCAGGTAAGATGTAAAGACAAAAGACTATGCAATACAGCAGGGACCAAAGTAGTATTGACAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGGTCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAGCAAAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCCATTAAACTTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTGTCGAGATAGCTGAGGTTGGTTCATACGAATGGGTGAGCTTAAGCAGAAACTATGGAGCAGTTTGGGATACAAATAAAGTACCCAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAAATGGAGCCATTTACGATACTGGAGTTCAAATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGGTGATAAACCATGGAAATAA 792 39.27 MAWFLSLFFFFLISSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQQLLNTGIVDVEYKRIPCGYKSKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYEWVSLSRNYGAVWDTNKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKNGAIYDTGVQIYDIAKEGCLASQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3576001 3578792 - CcPI632755_02g003940.1 Cco02g0394 171151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0394 263 CDD DPBB_EXLA_N 16 141 - -
Cco02g0394 263 Gene3D - 141 245 IPR036749 -
Cco02g0394 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cco02g0394 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cco02g0394 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cco02g0394 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cco02g0394 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cco02g0394 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cco02g0394 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cco02g0394 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cco02g0394 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cco02g0394 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Cco02g0394 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g0394 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g0394 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g0394 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g0394 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Cco02g0394 263 Gene3D - 12 139 IPR036908 -
Cco02g0394 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0389 Cco-Chr2:3546354 Cco02g0394 Cco-Chr2:3576001 2.40E-98 dispersed
Cco02g0390 Cco-Chr2:3553527 Cco02g0394 Cco-Chr2:3576001 1.10E-111 dispersed
Cco02g0394 Cco-Chr2:3576001 Cco02g0397 Cco-Chr2:3592563 1.60E-102 dispersed
Cco02g0393 Cco-Chr2:3571752 Cco02g0394 Cco-Chr2:3576001 3.70E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0394 - - - 0.0