Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0397 ATGACTTCTTCATTTCTTGCTTTTATTAGCTTCTTTGTTCTCCTTATCTCTTTTGTTAATGCTTGCGATCGATGCATTCATCAATCTAAAGCGACTTATTACTATAGTGATGCACCTATTACATATGGGGCATGTGGCTATGGTTCTTTGGCAAATGAATCTTTCCATGGATACATTGCTGGTGCGGTGCCTTTGCTATACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAGAACAAGAAGCTGTGCAGCCCAATAGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAACCGAACTGATTTTGTTCTCAGTAGGAAAGCTTTCTCAGAAATGGCTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATTGAATACAAGAGGGTACCATGCGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTGCCTGAAGGAGCATTGCAACTAAGAATTGTGGTAGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGGATTCAAATTGAAGATATTGCCAAAGAATTTTGTTCCCCAAGAGAGTGTGGTGATAGAATATGGAAATGA 801 38.58 MTSSFLAFISFFVLLISFVNACDRCIHQSKATYYYSDAPITYGACGYGSLANESFHGYIAGAVPLLYKQGAGCGACFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKRVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGETYDTGIQIEDIAKEFCSPRECGDRIWK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3592563 3594688 - CcPI632755_02g003970.1 Cco02g0397 171154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0397 266 SUPERFAMILY PHL pollen allergen 146 242 IPR036749 -
Cco02g0397 266 Gene3D - 143 247 IPR036749 -
Cco02g0397 266 SUPERFAMILY Barwin-like endoglucanases 11 145 IPR036908 -
Cco02g0397 266 Pfam Lytic transglycolase 65 136 IPR009009 -
Cco02g0397 266 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
Cco02g0397 266 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
Cco02g0397 266 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Cco02g0397 266 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
Cco02g0397 266 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Cco02g0397 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 243 IPR007117 -
Cco02g0397 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Cco02g0397 266 Gene3D - 17 141 IPR036908 -
Cco02g0397 266 Pfam Expansin C-terminal domain 152 218 IPR007117 -
Cco02g0397 266 CDD DPBB_EXLA_N 17 143 - -
Cco02g0397 266 PANTHER EXPANSIN-B3 9 249 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0393 Cco-Chr2:3571752 Cco02g0397 Cco-Chr2:3592563 3.10E-101 dispersed
Cco02g0394 Cco-Chr2:3576001 Cco02g0397 Cco-Chr2:3592563 1.60E-102 dispersed
Cco02g0397 Cco-Chr2:3592563 Cco03g1250 Cco-Chr3:24987385 9.50E-87 dispersed
Cco02g0396 Cco-Chr2:3585393 Cco02g0397 Cco-Chr2:3592563 8.00E-102 tandem
Cco02g0397 Cco-Chr2:3592563 Cco02g0398 Cco-Chr2:3596181 1.90E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0397 - - - 0.0