Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0421 ATGGTTATGGAGGATAACGAGAGCTGTGGGAGTAGAGCGTACGACTCGTTGTCGCCGGCGCAGAGTCGGCAACAGAGGCAGAAGTTTGAGGTCTACAATGAGGTTCTACGGCGTTTGAAGGATTCAAACAACGAAGAGGCTATGCAGCCTGGTTTCGATGACGAACTATGGGTTCACTTCAATCGTCTTCCCACTCGATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCACGATCCGGCAAATCGACCTGCCATTGAAGTCCGCCTAGTGCAGGTCCAAGCCATTTCTGATGAGCATTCTGCTGAATTTGCTGATTCATGTTCTGTAAAAGACACTGATCATAATTCTGCAAATTTCGTGGGCAGACAGAGCATACATCCACCACCTGCCTTCGGGTCATCTCCTAACCTTGAGGCCTTGGCCCTTGAAGCTAATAACGCTCAGGATCTGGAGGTTGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCTATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACGGTTGACGGTTTCTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGATTGAAGACTGCATTAGAGAAGGAAGTCTTACAGGTTGAGAATCGGGTTTGGCCAAATCGTAAATCCTCGTCTCCTGTGGGGGAACTCGATATAACAACTAAATGTGAGCTTGATCGTGTGGAAATACCCACAGATGGGACCGATGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACAGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTAAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGCACGAAGCCCCCAAGCTTGTGCATTGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGAACTTTTAGGCTTCCATCTTTGCTCAAGGTGGCCATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTAAAGGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTCGGTGTTGCCAGGGTAAAAGCTCAATCAGGAGTTATGACTGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGGTATTGTCTTGTGGGAGCTGCTAACCGGAAAGCTACCTTATGAATTCCTAACACCATTACAAGCCGCAGTCGGAGTGGTACAAAAGGGTTTACGGCCTACTATTCCTAAGCACACTAATCCCAAGCTGGCTGAGTTGCTAGAAAAATGTTGGCAGCAAGATCCAACATGCAGGCCTGACTTCTGTGAAATTATCGATATATTGTTGCAGATAAGTAAGGAAGTAGCTGAAGACGGCGATGAACGACGAAAGGAGAAGAGTGGAGGATTATTTTCGGTGTTGAGACGAAACCATCACTAA 1722 44.19 MVMEDNESCGSRAYDSLSPAQSRQQRQKFEVYNEVLRRLKDSNNEEAMQPGFDDELWVHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAISDEHSAEFADSCSVKDTDHNSANFVGRQSIHPPPAFGSSPNLEALALEANNAQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGFSLDVFVVDGWPYEETERLKTALEKEVLQVENRVWPNRKSSSPVGELDITTKCELDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLAELLEKCWQQDPTCRPDFCEIIDILLQISKEVAEDGDERRKEKSGGLFSVLRRNHH 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3792907 3802783 + CcPI632755_02g004210.1 Cco02g0421 171178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0421 573 SUPERFAMILY Protein kinase-like (PK-like) 278 542 IPR011009 -
Cco02g0421 573 FunFam serine/threonine-protein kinase HT1 372 562 - -
Cco02g0421 573 MobiDBLite consensus disorder prediction 11 26 - -
Cco02g0421 573 CDD ACT_TyrKc 179 246 - -
Cco02g0421 573 MobiDBLite consensus disorder prediction 1 26 - -
Cco02g0421 573 Gene3D Transferase(Phosphotransferase) domain 1 372 566 - -
Cco02g0421 573 PANTHER SERINE-THREONINE PROTEIN KINASE 45 544 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco02g0421 573 SUPERFAMILY ACT-like 179 249 IPR045865 -
Cco02g0421 573 Gene3D Phosphorylase Kinase; domain 1 283 371 - -
Cco02g0421 573 CDD STKc_MAP3K-like 299 542 - -
Cco02g0421 573 Coils Coil 231 251 - -
Cco02g0421 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 PRINTS Tyrosine kinase catalytic domain signature 450 460 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 FunFam Serine/threonine-protein kinase isoform 1 283 371 - -
Cco02g0421 573 ProSiteProfiles ACT domain profile. 181 259 IPR002912 -
Cco02g0421 573 SMART serkin_6 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0421 573 Pfam Protein tyrosine and serine/threonine kinase 293 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0421 Cco-Chr2:3792907 Cco10g0042 Cco-Chr10:473834 5.00E-226 dispersed
Cco02g0421 Cco-Chr2:3792907 Cco04g1941 Cco-Chr4:33738205 1.80E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86555 PF07714 PK_Tyr_Ser-Thr 3.70E-74 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0421 - - - 0.0