Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0422 ATGGATACGGTTAAGAACTCCTTCAAAGGTAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGCGTAGCTGGTAGCGAAATTAATCACGAGGAGCTCCCCATTCTTCTCAATCGCGAACCTACGGGTCATCGTCGCCGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTCATTCTCAAGATCGACGATGGCGGTTCTTCGGCTGTTTCCAGACATCAGGACCCTGCCGGCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTGCGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTTCGAGTAGGGTTAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGTACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTGGGGGAGAAACGACTTTGGATATGGATTTAGAAATGGAGGAGTTGAGGCCTGATAGGATTATACCTCCATTGGCAGAATCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCGCGATTTTCAGGAAGAGTATAAAGGAGGACAACCGCCATGGCAGCAATCGCATCATGAACGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGTCTGTTGCTGAGGCTATGAGGTGCGCGTCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTTAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCGGCAGAGCCAGACCGGCTCCCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGATGACGATCCCTTTCTGGAGGAGGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTTTAATCACCGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTAATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGCATCTGTTGTTCAATAGGCGGGTTGAGAAACAAACCAACACTAGTATACTCAATTATGTGAGGAGAGTTTTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCCCTTATTGAAATACGGAAGAATGAGGAAGAAGATGGGAGGATTGCAGATGAAGTCCAAATATTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGGTAATAGGTAGTGGACGGACTCACAAAAGTTTTTGTGCAAAAAGTACAAAATTTTCTCGAGCACTTACCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATATCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAACGTGGCTCGGCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGATGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAACTGAAAACCGGAGGATAAGCAAATCTGCTTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCATTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAACGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCTACAACTTCTACCGTAGTCCTGAAATGGGCGAATCGGTTGAATTCTCTGTCCATATAGCTACTCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTTCCCCTATGATTGTGTTCAAGGATATCGATGGTTTAAACATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCATCTTGGTCGAAGAAGTCGTTAAAATCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATGTCAATATCCGTTCACTGCCTTCTTCTGCACCCTTCATTGGCTTTCCATCTAATTGGACTTCCTCTGCAAGTTGA 2859 42.88 MDTVKNSFKGNVSFKHTRKISAGVAGSEINHEELPILLNREPTGHRRRLRDRHPVNDSDPSDRTEVILKIDDGGSSAVSRHQDPAGNNGGKVWRESRCDFWNNDAIGIGESSSRVSGVDRNEGFEFVQPGYGMEDPPTKLIGEFLHKQKIGGETTLDMDLEMEELRPDRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSRDFQEEYKGGQPPWQQSHHERLGSPTISGVQNESVAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLPGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDEFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNRRVEKQTNTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEEDGRIADEVQILQNAGINIPPDLKAATFASVKSGRVIGSGRTHKSFCAKSTKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPYLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVFKTMSLFEGATENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFVFISSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMIVEEMNILTTVFLRYDNLKIIIPNSVLATKLIYNFYRSPEMGESVEFSVHIATPAEKITAMKQRIISYIEGNKEHWCPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSILVEEVVKICQELDIQYRLLPIDVNIRSLPSSAPFIGFPSNWTSSAS 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3805530 3809468 + CcPI632755_02g004220.1 Cco02g0422 171179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0422 952 MobiDBLite consensus disorder prediction 173 233 - -
Cco02g0422 952 PIRSF Memb_At2g17000 52 952 IPR016688 -
Cco02g0422 952 SUPERFAMILY Sm-like ribonucleoproteins 765 824 IPR010920 -
Cco02g0422 952 Gene3D - 775 824 IPR023408 -
Cco02g0422 952 MobiDBLite consensus disorder prediction 200 217 - -
Cco02g0422 952 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 947 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cco02g0422 952 MobiDBLite consensus disorder prediction 176 199 - -
Cco02g0422 952 FunFam Predicted mechanosensitive ion channel 775 824 - -
Cco02g0422 952 Pfam Mechanosensitive ion channel, beta-domain 768 824 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0422 K22048 - - csv:101207426 1665.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0422 Cco-Chr2:3805530 Cco02g1208 Cco-Chr2:22474843 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0175 . 134 524 Mechanosensitive Ion Channel Family AT4G00290 67.5 4.4e-154 541.6
Cco08g1322 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.1 6.3e-196 681.0
Cco10g0731 . 127 793 Mechanosensitive Ion Channel Family AT5G10490 56.0 9.5e-192 667.2
Cco08g1322 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 56.7 4.4e-197 684.9
Cco10g0731 . 108 570 Mechanosensitive Ion Channel Family AT1G58200 65.5 2.2e-172 602.8
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 7.4e-261 897.1
Cco02g0422 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cco02g1208 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.5 5.8e-247 850.9
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 8.1e-281 963.4
Cco02g0422 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.4 3.5e-268 921.4
Cco02g1208 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.4e-237 818.9
Cco02g0422 . 266 936 Mechanosensitive Ion Channel Family AT2G17000 58.2 1.2e-220 763.5
Cco02g1208 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.9e-164 575.1
Cco05g1797 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.3 1.2e-184 643.7
Cco05g1797 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.3 5.8e-203 704.5
Cco03g1576 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 53.8 6.7e-199 691.0
Cco05g1792 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.4 2.4e-164 576.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67