Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0445 ATGTCGAAAGAAGTGACGGAAGAGGGACAGTCCGGTCTGAGAAAGGACTACGTCGACCCCCCGCCGGCGCCGCTCATCGACGCCGCCGAACTCACTCTCTGGTCCTTCTACAGAGCCCTAATCGCTGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAAACCAAAATGTGCGACGGCGTCGGAATCCTCGGAATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCTGGAATCTCCGGTGGTCATATTAATCCGGCGGTGACATTCGGGCTGTTTCTAGCGAGGAAAGTGTCACTGATTAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCATCGTCGGCGTTGGGTTGGTTAAGGCTTTTATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGGGGAACAGCTCTTGGTGCTGAGATTATTGGAACTTTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATCCCAAGAGAAGCGCGCGTGATTCTCACATCCCTGTTTTGGCTCCATTGCCGATTGGCTTCGCCGTGTTCATGGTTCATTTAGCAACCATTCCCATCACCGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTCATCTACAACCGTGAAAAACCCTGGAACGACCACTGGATCTTTTGGGTCGGTCCGTTCGTCGGAGCTTTAGCGGCGGCGGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACAAACTGA 843 54.92 MSKEVTEEGQSGLRKDYVDPPPAPLIDAAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAIVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4016780 4018543 - CcPI632755_02g004450.1 Cco02g0445 171202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0445 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cco02g0445 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 Pfam Major intrinsic protein 31 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g0445 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cco02g0445 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cco02g0445 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cco02g0445 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Cco02g0445 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0445 Cco-Chr2:4016780 Cco04g1099 Cco-Chr4:26416435 8.70E-123 dispersed
Cco04g0764 Cco-Chr4:22787659 Cco02g0445 Cco-Chr2:4016780 2.30E-10 transposed
Cco02g0445 Cco-Chr2:4016780 Cco02g1301 Cco-Chr2:24748590 3.40E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0445 K09872 - csv:101209627 551.977