Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0453 | ATGGAGATTCCAAGCAGTTGTTCAATGGATAGTTTCTTTGATGAACTTCTCAAAGACACTCATACTTGTACTCATACACATACTTGCAATCCACCAGGCCCTGACTACTCTCATACCCACACATGTTTTCATGTCCACACTAAAATTGTCCCTGCCCCATCTGAAGAAGACAAGGTTGTTACTGATGACACTGCAGAATCAACTGAGAAGAAGTCGAAGAAACGCCCATTGGGTAACCGTGAAGCTGTTCGTAAGTACCGTGAGAAAAAGAAAGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCATTGAATCAGCATTTGATGAAGAGATTGCAGGGGCAGGCAGCACTCGAGGCTGAGATTGCTAGGCTAAAGTGTTTGCTTGTGGATATTAGGGGCAGAATCGAAGGGGAGATTGGTTCTTTCCCTTACCAAAAAGCTGTTAATCCTAACTTGTCCAACCCAAGCATCCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGAGGATCAGGTTTACTGCCTCCATCCCGGGGTCGATGGCAACAGAAGCAGTGAAGGTGCTGTGATAAATGGACAAAGCTTTGGTGCTTGTGAATTTGAAAATCCTCAATGTTTGGCAAATCATGACTCGGGATCAAAAGAACTACCTGGGTGTGGAGTAGGGAATGCAGTTTCAAATGATATTTCTTCAGGCGCAACGAAGAAGAAAGGAGGAAGTCGTAAAGAGACATGGGCCTGA | 759 | 44.93 | MEIPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPSEEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLSNPSIPGAYVMNPCNMQCEDQVYCLHPGVDGNRSSEGAVINGQSFGACEFENPQCLANHDSGSKELPGCGVGNAVSNDISSGATKKKGGSRKETWA | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4095136 | 4097094 | - | CcPI632755_02g004530.1 | Cco02g0453 | 171210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0453 | 252 | Pfam | Basic region leucine zipper | 68 | 124 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0453 | 252 | SMART | brlzneu | 67 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0453 | 252 | Coils | Coil | 80 | 114 | - | - | |
Cco02g0453 | 252 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 69 | 116 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0453 | 252 | SUPERFAMILY | Leucine zipper domain | 71 | 117 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0453 | 252 | MobiDBLite | consensus disorder prediction | 55 | 79 | - | - | |
Cco02g0453 | 252 | CDD | bZIP | 73 | 126 | - | - | |
Cco02g0453 | 252 | MobiDBLite | consensus disorder prediction | 230 | 252 | - | - | |
Cco02g0453 | 252 | Gene3D | - | 57 | 135 | - | - | |
Cco02g0453 | 252 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 2 | 173 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0453 | Cco-Chr2:4095136 | Cco02g1296 | Cco-Chr2:24656784 | 4.30E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58712 | PF07716 | bZIP_2 | 7.70E-14 | CL0018 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0453 | K25785 | - | csv:101208161 | 488.419 |