Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0453 ATGGAGATTCCAAGCAGTTGTTCAATGGATAGTTTCTTTGATGAACTTCTCAAAGACACTCATACTTGTACTCATACACATACTTGCAATCCACCAGGCCCTGACTACTCTCATACCCACACATGTTTTCATGTCCACACTAAAATTGTCCCTGCCCCATCTGAAGAAGACAAGGTTGTTACTGATGACACTGCAGAATCAACTGAGAAGAAGTCGAAGAAACGCCCATTGGGTAACCGTGAAGCTGTTCGTAAGTACCGTGAGAAAAAGAAAGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCATTGAATCAGCATTTGATGAAGAGATTGCAGGGGCAGGCAGCACTCGAGGCTGAGATTGCTAGGCTAAAGTGTTTGCTTGTGGATATTAGGGGCAGAATCGAAGGGGAGATTGGTTCTTTCCCTTACCAAAAAGCTGTTAATCCTAACTTGTCCAACCCAAGCATCCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGAGGATCAGGTTTACTGCCTCCATCCCGGGGTCGATGGCAACAGAAGCAGTGAAGGTGCTGTGATAAATGGACAAAGCTTTGGTGCTTGTGAATTTGAAAATCCTCAATGTTTGGCAAATCATGACTCGGGATCAAAAGAACTACCTGGGTGTGGAGTAGGGAATGCAGTTTCAAATGATATTTCTTCAGGCGCAACGAAGAAGAAAGGAGGAAGTCGTAAAGAGACATGGGCCTGA 759 44.93 MEIPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPSEEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLSNPSIPGAYVMNPCNMQCEDQVYCLHPGVDGNRSSEGAVINGQSFGACEFENPQCLANHDSGSKELPGCGVGNAVSNDISSGATKKKGGSRKETWA 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4095136 4097094 - CcPI632755_02g004530.1 Cco02g0453 171210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0453 252 Pfam Basic region leucine zipper 68 124 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0453 252 SMART brlzneu 67 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0453 252 Coils Coil 80 114 - -
Cco02g0453 252 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 69 116 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0453 252 SUPERFAMILY Leucine zipper domain 71 117 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0453 252 MobiDBLite consensus disorder prediction 55 79 - -
Cco02g0453 252 CDD bZIP 73 126 - -
Cco02g0453 252 MobiDBLite consensus disorder prediction 230 252 - -
Cco02g0453 252 Gene3D - 57 135 - -
Cco02g0453 252 PANTHER CCAAT/ENHANCER BINDING PROTEIN 2 173 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0453 Cco-Chr2:4095136 Cco02g1296 Cco-Chr2:24656784 4.30E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58712 PF07716 bZIP_2 7.70E-14 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0453 K25785 - csv:101208161 488.419