Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0460 ATGAGCATCCACCACCGCCCTCCGCCGTCCTCCTCCGCCCTCAAATGGCTCGGCTTAGTTACCGCCGTCTGGGTCCAATCCATCTCCGGCAATAATTACACCTTCTCCAACTACTCCGCCGCCCTGAAATCCCTCATGAACCTGTCCCAGCTCCAACTCAACAATCTCTCCGTCGCCAAAGACCTCGGGAAGGCCTTTGGCCTCCTCGCCGGCCTCGCCTCCGACCGCTTCTCCACCTCCCTCCTCCTCCTCATCGGCTCCATCGAAGGCCTTATTGGCTACGGCGCTCAATGGCTCGTCGTCAGTCAAAAAATCAAACCACTCCCTTACTGGCAGATGTGTATATTTTTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGTACCGCCATTTTCACCGATCTTTGTACCGCTCTTTTCTCCGATAATCCCTCTTCTTTTCTCGCCCTCCTTTCCCTCACCCCCTTCGCCGTTTGTCTCACTGCTGTTCTCTTCCTCCGTGAAATCCCCTGTTCCACCGATAACGAAACAGAGGACTCGAGATACTTCTGGGTACTCAACGCCGTTTCCGTCGCTGTCGCTGTCATTCTCTTAGCCTTCGATTCGATCCCAAATCCCACCTCGTCCGTATCGAGAATTTTCTCCATTGTGTTGCTGATTTTGCTAGCCTCACTTATGGTAATCCCACTCCACTCGTTTGTCAAAAACAGAGGTCGGTCCGGTGAAGTTGCAGAGGCGTTGCTGGCGGACGAGGGTGCGGCGGAGGGTGCGGAAGAGGGGAAGCCGGTGATCGGAGAAGATCATACGATTGTTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTTTGTGGAGTGGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTCTTGGATACGACGAGGTTTCGATTTTCATATCTCTGATGAGCATTTGGGGGTTTTTTGGCCGGATTTTATCGGGATCGGTGTCGGAGCATTTCATCAAGAAAGCAGGAATGCCAAGGCCACTATGGAACGCAGCTTCTCAAATTCTAATGGCACTTGGCTACATTCTCTTAGCCATTGCCATGCCTGGATCCTTATACATCGGCTCGGTTGTTGTCGGGATTTGCTATGGCGTCCGTCTCGCCATCACCGTCCCAATGGCCTCTGAAGTCTTCGGTCTCAAGAATTACGGCATGATTTACAATGTTCTAATCCTCAACCTCCCACTCGGTTCGTTCCTCTTCTCAGGACTGCTTGCCGGGATCCTCTACGACTGGGAGGCAACGACGACGAAGGAGGGCGGCAATACGTGTGTGGGAGGGCATTGTTATAGGCTTGTGTTTGTTGTAATGGCTTGTTCATGTCTGGTTGGGTTTGCCATGGACTTGTTTTTGGCCTTTCGAACCAAGAGGTTGTATTCCAAAATGAGGGGTCTAAAGGGATAA 1548 51.74 MSIHHRPPPSSSALKWLGLVTAVWVQSISGNNYTFSNYSAALKSLMNLSQLQLNNLSVAKDLGKAFGLLAGLASDRFSTSLLLLIGSIEGLIGYGAQWLVVSQKIKPLPYWQMCIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCTALFSDNPSSFLALLSLTPFAVCLTAVLFLREIPCSTDNETEDSRYFWVLNAVSVAVAVILLAFDSIPNPTSSVSRIFSIVLLILLASLMVIPLHSFVKNRGRSGEVAEALLADEGAAEGAEEGKPVIGEDHTIVEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLALGYDEVSIFISLMSIWGFFGRILSGSVSEHFIKKAGMPRPLWNAASQILMALGYILLAIAMPGSLYIGSVVVGICYGVRLAITVPMASEVFGLKNYGMIYNVLILNLPLGSFLFSGLLAGILYDWEATTTKEGGNTCVGGHCYRLVFVVMACSCLVGFAMDLFLAFRTKRLYSKMRGLKG 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4166174 4170367 + CcPI632755_02g004600.1 Cco02g0460 171217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0460 515 CDD MFS_Mch1p_like 14 492 - -
Cco02g0460 515 Gene3D MFS general substrate transporter like domains 13 206 IPR036259 -
Cco02g0460 515 Gene3D MFS general substrate transporter like domains 301 506 IPR036259 -
Cco02g0460 515 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 509 - GO:0016020(PANTHER)
Cco02g0460 515 SUPERFAMILY MFS general substrate transporter 8 505 IPR036259 -
Cco02g0460 515 Pfam Nodulin-like 15 259 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0460 Cco-Chr2:4166174 Cco07g1312 Cco-Chr7:27216412 5.90E-93 dispersed
Cco02g0460 Cco-Chr2:4166174 Cco02g1280 Cco-Chr2:24409518 9.10E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0460 - - - 0.0