Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0468 ATGAACATCGTCTTCTTCCTTTTAGCTTTCTTACTCTTCACCGGCTGCGCCAACTCCTCCGACTTCTCCATCGACGAAGCCACCGTCGCCGAAATCCAAGATGCCTTTTCCCAAAACAAACTCACCTCCACACAACTTCTAGATCATTACCTCAACAAGATCCATTTCCTCAATCCACTCCTCAAAAGCGTTCTCGAAGTGAATCCAGATGCAAGAGCTCAAGCGGAAGCCGCCGATCGAGAGAGAATCCTCGCCGGTGGAAAAGCCCTAGGTGAACTCCATGGAATTCCAGTTCTGCTCAAGGACGCCATTGCGACCAAGGATCGCCTCAATACCACCGCCGGATCCTTCGCGTTGCTGGGTTCGGTGGTGCCTCGAGATGCGACGGTGGTTAGTCGCCTGAGGAACGCCGGCGCGGTGATTTTGGGGAAAACTTCGCTTACAGAATGGTATGGGTCTCGTTCTTTGAAGATTCCCAATGGATGGTGTGCTCGTGGCGGTCAAGCGCTGAACCCATATGGAAAAGGAGGAGATCCATGTGGGTCAAGCAGTGGGTCTGCAATATCGGTGGCGGCGAACATGGCGGCGATGTCTTTGGGGACGGAAACTGATGGGTCAATTCTGTGTCCGGCCGATTACAACTCGGTGGTTGGCATCAAGCCCACCGTCGGTCTCACGAGCCGGGCCGGCGTTATCCCTATCTCTCCTCGCCAAGACACAATTGGGCCCATATGTAGGACAGTTTCTGATGCAGTTTATGTGCTTGAAGCTATTGTGGGATTTGACCCAATGGACTGTGAAGCAACCGAGGAAGCATCTCAATTCATACCTTCAGGTGGTTACAAACAGTTTCTGAGGAAAGATGGGCTCAAAGGAAAGAGATTGGGCATTGTTAGGCATCCCTTTGTTGACTTGTATCCCAATGACTCCATTGCCATTCCAACCTTTGACCAACATCTCAATCTTCTAAGGAAAAGTGGAGCAACCATTGTCGATAACCTTCAAATATCAAATGTAGATGTCATTTTGAATCCTTTTGAAAGTGGTGAATTCATTACAATGATAGCTGAGTTCAAGGTAACCCTAAACGATTACCTCAAGAAACTGATCCAAAGTCCAGTCAGATCTTTGGCTGACATTATCGCCTTCAACAAAAACCACCCTGAACTGGAGAACATGGAAGAGTATGGCCAAGATGCCTTTCTTTTATCTGAGCAAACAGACGGGATTGGAAAGATGGAGAAGGAGGCGATTAGTAGGATGATGAACTTATCGCGAGATGGGTTCGAGGAAATAATGAAAGCCAACAATCTGGATGCAATGGTGACATTAGGGACGGGAGCAGAAAGTGTCCTAGCAATTGGGGGATACCCTGCAATAACTGTCCCAGCTGGATACGAAAGAAATGGAAACCCATTTGGTATTCTCTTTGGAGGTCTCAAAGGGAGTGAACCGAAGCTAATTGAGATTGCTTATGCATATGAACAAGCCACCATGGTACGAAGGCCACCTTCTCTTCTTTCTCAATCATCAAGTTTGTGA 1542 48.05 MNIVFFLLAFLLFTGCANSSDFSIDEATVAEIQDAFSQNKLTSTQLLDHYLNKIHFLNPLLKSVLEVNPDARAQAEAADRERILAGGKALGELHGIPVLLKDAIATKDRLNTTAGSFALLGSVVPRDATVVSRLRNAGAVILGKTSLTEWYGSRSLKIPNGWCARGGQALNPYGKGGDPCGSSSGSAISVAANMAAMSLGTETDGSILCPADYNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVYVLEAIVGFDPMDCEATEEASQFIPSGGYKQFLRKDGLKGKRLGIVRHPFVDLYPNDSIAIPTFDQHLNLLRKSGATIVDNLQISNVDVILNPFESGEFITMIAEFKVTLNDYLKKLIQSPVRSLADIIAFNKNHPELENMEEYGQDAFLLSEQTDGIGKMEKEAISRMMNLSRDGFEEIMKANNLDAMVTLGTGAESVLAIGGYPAITVPAGYERNGNPFGILFGGLKGSEPKLIEIAYAYEQATMVRRPPSLLSQSSSL 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4221301 4224533 - CcPI632755_02g004680.1 Cco02g0468 171225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0468 513 Pfam Amidase 46 442 IPR023631 -
Cco02g0468 513 Gene3D Amidase signature (AS) domain 14 506 IPR036928 -
Cco02g0468 513 SUPERFAMILY Amidase signature (AS) enzymes 23 505 IPR036928 -
Cco02g0468 513 PANTHER AMIDASE 15 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0468 K01426 - - csv:101205749 859.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0468 Cco-Chr2:4221301 Cco02g1268 Cco-Chr2:24072673 3.90E-113 dispersed
Cco02g0467 Cco-Chr2:4216638 Cco02g0468 Cco-Chr2:4221301 4.50E-162 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g125 . . . . . . . . . . . . . . Sed05g2230 . . Bhi05g01736 Tan02g0704 Cmetu01g0664 . Hepe02g0439 . . Cla02g00441 Cam02g0450 Cec02g0449 Cco02g0468 Clacu02g0452 Cmu02g0447 Cre02g0780 . . . . . Csa07g00086 Chy11g00285 Cme01g01279 . Blo13g00523 . . . . . . Sed01g0214 . . . . . . . . Bhi10g01880 Tan05g1177 Cmetu11g0691 . Hepe08g0270 . . . . . . . . . . Csa02g01364 Chy01g00693 Cme11g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117