Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0469 ATGACGATTTCGGAGAATACGAAGGGTCTGGTTCTTGCTATGGCGTCCAGTGTGTTTATTGGGTCGAGTTTTATCTTGAAGAAGAAAGGACTTAAGCGTGCCGGAGCTACAGGGGCCAGAGCAGGTGTTGGTGGTTACACATACCTGTTAGAGCCACTTTGGTGGACAGGCATGGTCACAATGATTATTGGAGAGATTGCAAACTTTGTAGCATATATTTATGCCCCAGCAGTTTTAGTCACACCCCTTGGTGCACTGAGCATTATTGTCAGTGCTGTTTTAGCCCACTTCTTATTGAAGGAGAGGCTACAGAAAATGGGTGTTGTAGGGTGTTTATCTTGTATTGTAGGATCAGTTATAATAGTTATCCATGCACCTCAGGAACATACTCCTGATTCTGTTGAAGAGATTTGGGATTTAGCAACTCAACCAGCTTTTCTAGTCTACATTGCTGCTATAGCTTCATTAGTGTTGGCTCTCATGTTGTATTTCGAACCTCGTTATGGACATGTAAACATACTGGTCTACTTGGGAATCTGTTCTCTAATGGGTTCATTGACGGTTATGAGTATTAAAGCTATCGGAATAGCGATACGGCTTACGCTTGAAGGGGTAAGCCAAGTAGCTTACCCTCAAACTTGGCTTTTTGTCACAGTTGCAGTAGTCTGTGTCATCACACAACTAAATTATTTGAATAAGGCATTGGATACATTCAATGCGGCCCTTGTATCTCCAGTATATTATGCCATGTTCACGACATTGACTATTATTGCTAGTGGTATCATGTTCAAGGACTGGTCTGGCCAGAATGCAAGCACGATAGTCTCTGAATTATGTGGATTCATTACAGTCCTTTCCGGAACTATCATTCTTCATTCAACCAGAGAACAGCAACCAGTCTCCTCACAAGGATCTGTGGCATGGTATATTAGTGGGGATTCAATGAAAGTACACTCATACTGGAAGGATGAGTACAATGCCCCATTTTTAAATTGCAACGACGAATTGGCATATCAGTCATCGTCTTCTCAAGATTCAAGCAGTCCTGTCCCCTTTGCTGCTGCAAAAAGGTTTAGCGTTCAAACCCAAGCGGCTCGATTTGACACAACTCCGGCCACCCATTCTGCTGCCAACAAACGCAAACCCCAAATTCTCACAGAATCTCGAAGCACAACAGCAATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGATTCCGAGGAGCACGAAGCTCAACTCCTTAAAGAAGAGGAACAGCAGAAACAGCAGGAACTCAGCCTGGATTTTCCTTCCCTCAACGACGCCTTGGCCACCAAGCCGAAGAAGAAAGGGCAAACTCTCTCATTGGCTGAGTTCAACAGCTATGGAATTAGTGGGTCGAGATCTTCTTCCCAAGGCCCCAGGCATGAGGATTTGATTGTACTACCCACCGGTCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGATTCAGGAATTATGGTTCGAATGGTTCGTATGAGAGGAATAATAGGTATTCTAATGGGGATGATTCGTCTGATTCGAAATGGGGTTCGTCTAGGGTTTCTGATGAGAATCGGAGGAGTAGTAACGGGTCTAATAGGGGGGATTCGAATAAGGAATTTACATCTTCTAGGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCGATGGCTGCAAATGGATTTGAGAGGAGGGAAAGAGGAGTAGGGTTTTCGGATTCGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATGTTCCATCGGATGGAAGGAGATTTCGAGCTAACGGCGGATTTGACAGAGAGCGACGAGGAGGGTTCACGTCGAGCGGCGGTGGGGCAGATTCCGACAATTGGGGGAGGAAGAAAGAAGAAGGCAATACTGGTGGCGTCATTGGTGGTCGGCCAAAGCTTAATCTGCAGCCACGTACGCTGCCGGTTAGCGACGGGAAATCCTCGGAGATATCAGGGACGACGGCGAGGCCCAAGAGTTCGAACCCATTTGGAGCGGCGAGGCCGAGGGAAGAGGTTTTAGCCGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATCAAGGAGGTGTCACTGGAGGAGAAGACAGAGAAATCCAACGCCTTTTCCTTTGGGAAAAAGAGCTTTGGCAATGGAAATAGCCGGGCTGCTGAGGATAGAACAGAGAAGAGCTGGAGGAAGCCGGAGTCTCCACCGCAGGAGTCACCGGAACCTCGTCCCGACAGAGTAGAGGATTTTGGTACAGGAAGGAATTTGGTGTGCCCTCCTTTTTCTGAATCTGAATGTATTGATTGTTTGTTTTCTTCTAGCTTTATTGCAGCAAAGCAAAGACAAGCAAGCAGCCATGAAAGCAGGAGGGAGGAGGCAGAGTTACCAATTTTTGTTCTGTTCCTTCAAATGGGTTAG 2490 47.03 MTISENTKGLVLAMASSVFIGSSFILKKKGLKRAGATGARAGVGGYTYLLEPLWWTGMVTMIIGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKERLQKMGVVGCLSCIVGSVIIVIHAPQEHTPDSVEEIWDLATQPAFLVYIAAIASLVLALMLYFEPRYGHVNILVYLGICSLMGSLTVMSIKAIGIAIRLTLEGVSQVAYPQTWLFVTVAVVCVITQLNYLNKALDTFNAALVSPVYYAMFTTLTIIASGIMFKDWSGQNASTIVSELCGFITVLSGTIILHSTREQQPVSSQGSVAWYISGDSMKVHSYWKDEYNAPFLNCNDELAYQSSSSQDSSSPVPFAAAKRFSVQTQAARFDTTPATHSAANKRKPQILTESRSTTAMAAMVSPWGKPGAWALDSEEHEAQLLKEEEQQKQQELSLDFPSLNDALATKPKKKGQTLSLAEFNSYGISGSRSSSQGPRHEDLIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNGDDSSDSKWGSSRVSDENRRSSNGSNRGDSNKEFTSSRADEVDNWALTKKPMAANGFERRERGVGFSDSQSSKADESESWVSNKSNVPSDGRRFRANGGFDRERRGGFTSSGGGADSDNWGRKKEEGNTGGVIGGRPKLNLQPRTLPVSDGKSSEISGTTARPKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSLEEKTEKSNAFSFGKKSFGNGNSRAAEDRTEKSWRKPESPPQESPEPRPDRVEDFGTGRNLVCPPFSESECIDCLFSSSFIAAKQRQASSHESRREEAELPIFVLFLQMG 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4227575 4235235 - CcPI632755_02g004690.1 Cco02g0469 171226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0469 829 MobiDBLite consensus disorder prediction 585 608 - -
Cco02g0469 829 Pfam Plant specific eukaryotic initiation factor 4B 397 719 IPR010433 GO:0003743(InterPro)
Cco02g0469 829 MobiDBLite consensus disorder prediction 664 684 - -
Cco02g0469 829 MobiDBLite consensus disorder prediction 527 541 - -
Cco02g0469 829 MobiDBLite consensus disorder prediction 744 774 - -
Cco02g0469 829 MobiDBLite consensus disorder prediction 462 556 - -
Cco02g0469 829 PANTHER UNCHARACTERIZED 4 344 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0015693(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)
Cco02g0469 829 Coils Coil 409 431 - -
Cco02g0469 829 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 124 - -
Cco02g0469 829 MobiDBLite consensus disorder prediction 506 526 - -
Cco02g0469 829 MobiDBLite consensus disorder prediction 721 775 - -
Cco02g0469 829 MobiDBLite consensus disorder prediction 571 702 - -
Cco02g0469 829 Pfam Magnesium transporter NIPA 6 296 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0469 K22733 - - csv:101206224 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1314 Cco-Chr3:26335115 Cco02g0469 Cco-Chr2:4227575 1.10E-108 transposed
Cco05g0370 Cco-Chr5:2998628 Cco02g0469 Cco-Chr2:4227575 2.30E-106 transposed
Cco05g1110 Cco-Chr5:10050333 Cco02g0469 Cco-Chr2:4227575 2.30E-109 transposed
Cco06g0858 Cco-Chr6:10554340 Cco02g0469 Cco-Chr2:4227575 1.20E-96 transposed
Cco08g1938 Cco-Chr8:30272691 Cco02g0469 Cco-Chr2:4227575 7.10E-33 transposed
Cco09g1028 Cco-Chr9:9830686 Cco02g0469 Cco-Chr2:4227575 6.40E-123 transposed
Cco11g0805 Cco-Chr11:9248147 Cco02g0469 Cco-Chr2:4227575 4.90E-107 transposed
Cco11g1388 Cco-Chr11:26670263 Cco02g0469 Cco-Chr2:4227575 2.20E-106 transposed
Cco02g0469 Cco-Chr2:4227575 Cco02g1266 Cco-Chr2:24054962 2.70E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g119 . . . . . . . . Cmo19g00735 Cmo11g01727 . . . . Sed05g2232 Cpe04g00579 Cpe15g00581 Bhi05g01740 Tan02g0707 Cmetu01g1169 . Hepe02g0441 . . Cla02g00443 Cam02g0452 Cec02g0450 Cco02g0469 Clacu02g0453 Cmu02g0448 Cre02g0781 Cone12ag1216 Cone8ag1268 . . . Csa07g00083 . Cme01g01281 Blo04g00555 . . Bda14g00604 Bpe15g00826 . Bma03g00595 . . . . Cma11g01391 . . Car19g00555 . . . . . . . . . . . . . . . . Lsi11g01183 . Chy01g00695 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86