Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0480 ATGTGGCTACAAAAAGGAAACAGTGTTAATGGCGTCAAAAAGGTAGCAGCAGCAGGCGGAGGGCGAAATGGGTTGGTTGCTATTGGTATAGACCGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCCGCCGACCATTTGCTCGGAAAGGGTCAAACTGTGATTTTAATCCATGTTGTTCAGAGACCTTCCAGTGCGGCTGCTTCTTTGATTGGGGAAGCCATTGTTTGTAGTGGCGATGGTAATTTCACAGCTGATTCCCCTCGTAAGCAGCAGCTCGAGATGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACTCGCAAGGATATTCAATGTCTTGATGTTATATTGGAAGACACCGATATAGTTAAAGCATTAATCGAATACGTATCGTACACTGCAATCGATAACTTGGTGCTCGGGGCTCCTTCGAAACATGGATTTATTAGGTTTAAGACGTCGAGCATGGGCAGTAGTGTGTCAAAAGGAGCACCGGATTTCTGCAATGTATATGTCATCTCGAAGGGGAAGGTGTCGTCAGTGAGAAATGCATCTCGCTCACCTCCCTTTACTTCCCCTCTACAAGACCATTTACGGAAGATTTCTAAGCCGATCGCAAAGGGAGCAATCACTCCTCGACATAAGTTTAATTTAAGAGACAGGACATCATTCAAGCCTCGCAGCTTTCAAGATGAATCAATCAAGTCACCTTTCTCTCATGGAGGAGAGAGAACTTCTATCTCAAAATGTAGTGGAGGATTCTCTGAGTCAGAATCTGACATATCCTTTGTAAGCTCTGGCAGACCAAGCACGGATCGTACTTCTGTTGCATTTGACTACTCTGATTTGGCTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCTCAGTAATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCCTGGTCATCTCAGAACTTGGATGAAGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAAAAGGCAACGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTTGCACAAGAGGCAGCAATGGCTATTGCAGAGCAGGAGCGAGCGAGATGCAGAGCGGCAATGGAAGCAGCTGATGCAGCTAAGAGAATTGCAGAGTTCGAATCACATAAAAGAGAAAATCTAGAGATTAAAGCACTTAAAGAAGCAGAGGAAATGCAGAGAGCATTGAAAAATCTTGCACAGAACGACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCGACGGAACATTTTGCACAATCTCGGAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGTTGTCGTCTTGATCACACATCAGTTGCAGTCAAGGTTTTGCGTCCTGATGCATCTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTGTATGAATACATGTCCAATGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGGAACACTCCTGTTATTCCTTGGCAATTGAGGTTTCGAATTGCTGCCGAGATTGCTACTGGTCTTCTGTTTCTCCACCAGACAAAGCCAGAGCCATTGGTGCACCGTGACCTCAAGCCAGCTAACATATTGCTGGACCACAACTATGTTTGCAAGATAAGTGATGTTGGTTTGGCTAGACTTGTACCTGCTGTGGCCGAAAATGTAACACAATGCTACATGACTTCGGCTGCTGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCCCCCATGGGGTTGGCTCACCATGTTGCTCGCTCTATCGAGAAGAGGACTTTTCGGGAGCTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGGCGAAAAGACAGACCAGATCTCGGCAAGGTTGTGTTGCCAGAACTTAACAAATTGAGAGAATTTGGTGAAGACAAAATGGAGTTCATGGTGTCAAGGGATAGTAGTGGATCTTTGAGCGGTTTTAGCCATGCCTCAATGGAGCAGGACGTAATGAGTGACCCACAACTAACGATGGCTTCAGAAAGTTCCAAGAGCCAATCTAGTGAATCATCACAGGTAGGAGGAGAATGA 2382 44.67 MWLQKGNSVNGVKKVAAAGGGRNGLVAIGIDREKGSQNALRWAADHLLGKGQTVILIHVVQRPSSAAASLIGEAIVCSGDGNFTADSPRKQQLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDIVKALIEYVSYTAIDNLVLGAPSKHGFIRFKTSSMGSSVSKGAPDFCNVYVISKGKVSSVRNASRSPPFTSPLQDHLRKISKPIAKGAITPRHKFNLRDRTSFKPRSFQDESIKSPFSHGGERTSISKCSGGFSESESDISFVSSGRPSTDRTSVAFDYSDLAPPRFSTSSEHSFASLPFKPKWTDLSNLNDFSSVSDESCRTSCSWSSQNLDEAELEMRRLKLELKQTMEMYSTACKEALTAKQKATELNNWRREEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKRIAEFESHKRENLEIKALKEAEEMQRALKNLAQNDIRYRRYSIEEVESATEHFAQSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDASQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVCKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHHVARSIEKRTFRELLDPAVVDWPVEQALCFAKLALQCAELRRKDRPDLGKVVLPELNKLREFGEDKMEFMVSRDSSGSLSGFSHASMEQDVMSDPQLTMASESSKSQSSESSQVGGE 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4357930 4363062 + CcPI632755_02g004800.1 Cco02g0480 171237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0480 793 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 442 542 - -
Cco02g0480 793 MobiDBLite consensus disorder prediction 237 256 - -
Cco02g0480 793 Gene3D Transferase(Phosphotransferase) domain 1 543 752 - -
Cco02g0480 793 Coils Coil 367 402 - -
Cco02g0480 793 Coils Coil 336 356 - -
Cco02g0480 793 Coils Coil 427 451 - -
Cco02g0480 793 ProSiteProfiles Protein kinase domain profile. 470 746 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0480 793 Pfam Universal stress protein family 27 168 IPR006016 -
Cco02g0480 793 CDD STK_N 25 179 - -
Cco02g0480 793 Gene3D HUPs 25 176 IPR014729 -
Cco02g0480 793 SMART serkin_6 470 732 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0480 793 Pfam Protein kinase domain 471 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0480 793 MobiDBLite consensus disorder prediction 750 793 - -
Cco02g0480 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0480 793 FunFam U-box domain-containing protein 51 543 742 - -
Cco02g0480 793 Gene3D Phosphorylase Kinase; domain 1 436 542 - -
Cco02g0480 793 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 176 - -
Cco02g0480 793 PANTHER OS02G0152300 PROTEIN 26 785 IPR051348 -
Cco02g0480 793 SUPERFAMILY Protein kinase-like (PK-like) 453 728 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0480 Cco-Chr2:4357930 Cco05g2905 Cco-Chr5:36584538 1.10E-242 dispersed
Cco02g0480 Cco-Chr2:4357930 Cco08g1414 Cco-Chr8:26072767 2.80E-235 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86556 PF00069 Pkinase 1.40E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0480 - - - 0.0