Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0486 ATGGAAGACTCAGTTACGGCGGAGCTCCTCGACGACACGGCGGTTTCCGAGGAGCCGCTTTCTCACTCGGCCGAAAACGGAACTCACTTGACGCCTCAAGAACTGGTAGCCAAGGCCATAGCTCCTGTTAAGCGGGAGTTTCTTCGCCCTCCGCCGGTGAGGTCATCCTCTAACAACGTTAAGGATGCTGCTTCCACTGCTAAGAATGATGGTGATGATAAGGCTGCTCCGTCCAGCTTGGTGATGGAGAAGAAGTCCAAACGTCAATTGAAACGAGAACGCCGTCAGGAACAGAAGTCCACTCGCCACTTGTGTCCTGAAATAGCGAAGACAGGAGATGTTAGTTCCTGTCGGTATAGTGATAAATGCCGCTTTAGTCATGATATTGAAGCCTTTAAATCTCAGAAACCGGCTGATCTCGAAGGAGAGTGTCCCTTCAGTGGTGCTGAACAACTTTGCCCCTATGGTTTAGCGTGTAGATTTGCCGGGACCCATAAGGAAGGTGTTCCTGCTGGTTCTTCAGTTACTTTGAAGAAATGCTCTGAAATGAATGGATTGAATAAAGATATTCAGAAGCTCTTATGGAAAAATAAGATGAAATTTCCTAAAGCTGATTCCAAACTTAAAGAACTTGGGCTCTTGGCTCATGGAAAGTCAAAATTGAGGTTCAAAGAAGACAAGGAAAATGCTGTATCAAATGACAGTGTGGTTGCAGACAGAACATGCTGCAGTGAAGTGAACAATGACTTGGATGCTGACTTAGAGATCTCTGTGGAAGTGCCAGAAGAAAATGGGCAGAAAGAAGGAACATTTTCATCTGATGAATCTCGACCCCTGAAGAAAGCAAAATCTCTGTCTTCAGAGAATTTTCATCCTGATCAAATCAACAACGGGGCATGTATGATTGATGAAACTATTGGTGAGGGCCATACATCAATCAAGTCTGAAGTTGTGAATGACAGTGAACTTCTTGATAGTGATGCAAGTCTAAAACCACATTCCCGTGAAAAGAAGCTTATTGATTTTAGAGATAAGCTGTATCTTGCCCCTCTGACCACTGTTGGGAATCTTCCCTTCAGAAGAGTTTGCAAAGTTTTAGGAGCAGATGTGACATGCGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCTTCAGAGTGGGCATTGTTGAGACGACATTCCTCAGAAGATCTATTTGGTGTACAGATATGCGGTGCATATCCAGACACAGTTTCACGTGCTGTAGAACTTATAGACAAGGAATGTGTGCTTGACTTCATTGACATAAACATGGGATGCCCAATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAGCCAATGCGTATGAAAAGTGTAGTAGAAGCAGCTTCGGGAATTGTGGATACACCCATTACAATTAAGGTTCGGACAGGCTACTTTGAAGGGAAGAATCGTATAGATTCACTTATTGCAGATATTGGTAACTGGGGAGCCAGTGCTGTAACCATTCATGGGCGGACTCGTCAGCAACGATACAGCAAGCTTGCTGACTGGGAATACATTAATCGGTGTTCCTCGTTGGCTCCTGATTCTCTGCAAGTTATAGGAAATGGGGACGTATTTTCATATTCAGACTGGAATCGACACAGGGATGAATGTCCAAAGTTAGCCACATGCATGATTGCTAGAGGAGCACTAATTAAGCCTTGGTTATTTACGGAAATTAAGGAACAAAGAAACTGGGACATAACTTCAGGGGAGCGGCTAAACATCTTGAAGGATTTTGTTCATTTTGGACTTGAGCATTGGGGTTCCGACACAAAAGGTGTTGAGACGACAAGGCATTTCTTATTAGAATGGCTTAGCTACACATGTAGATATATTCCCGTTGGTCTTCTGGATGTTGTTCCCCAACGCCTAAACTGGCGCCCACCCTCGTATTTCGGCCGTGATGACCTCGAGACGCTCATGTCCTCTGACTCTGCTGCTGACTGGATTAAGATCTCAGAAATGCTGCTTGGTAAAGTTCCCGATGGCTTCTCGTTCGCACCCAAACACAAGTCCAACGCCTACGACCGAGCCGAAAATGGCTAA 2094 44.79 MEDSVTAELLDDTAVSEEPLSHSAENGTHLTPQELVAKAIAPVKREFLRPPPVRSSSNNVKDAASTAKNDGDDKAAPSSLVMEKKSKRQLKRERRQEQKSTRHLCPEIAKTGDVSSCRYSDKCRFSHDIEAFKSQKPADLEGECPFSGAEQLCPYGLACRFAGTHKEGVPAGSSVTLKKCSEMNGLNKDIQKLLWKNKMKFPKADSKLKELGLLAHGKSKLRFKEDKENAVSNDSVVADRTCCSEVNNDLDADLEISVEVPEENGQKEGTFSSDESRPLKKAKSLSSENFHPDQINNGACMIDETIGEGHTSIKSEVVNDSELLDSDASLKPHSREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVSRAVELIDKECVLDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEAASGIVDTPITIKVRTGYFEGKNRIDSLIADIGNWGASAVTIHGRTRQQRYSKLADWEYINRCSSLAPDSLQVIGNGDVFSYSDWNRHRDECPKLATCMIARGALIKPWLFTEIKEQRNWDITSGERLNILKDFVHFGLEHWGSDTKGVETTRHFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPSYFGRDDLETLMSSDSAADWIKISEMLLGKVPDGFSFAPKHKSNAYDRAENG 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4480721 4486319 - CcPI632755_02g004860.1 Cco02g0486 171243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0486 697 Pfam Dihydrouridine synthase (Dus) 348 583 IPR035587 -
Cco02g0486 697 CDD DUS_like_FMN 345 579 IPR035587 -
Cco02g0486 697 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 95 173 - -
Cco02g0486 697 Gene3D Aldolase class I 341 583 IPR013785 -
Cco02g0486 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 32 696 - GO:0003723(PANTHER)|GO:0017150(PANTHER)
Cco02g0486 697 ProSitePatterns Uncharacterized protein family UPF0034 signature. 429 447 IPR018517 GO:0008033(InterPro)|GO:0017150(InterPro)|GO:0050660(InterPro)
Cco02g0486 697 SUPERFAMILY FMN-linked oxidoreductases 345 658 - -
Cco02g0486 697 Gene3D - 94 173 - -
Cco02g0486 697 ProSiteProfiles Zinc finger C3H1-type profile. 99 130 IPR000571 GO:0046872(InterPro)
Cco02g0486 697 MobiDBLite consensus disorder prediction 1 104 - -
Cco02g0486 697 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 341 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0486 K05544 - - csv:101215945 1342.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g58 . . . . . . . . Cmo19g00714 . . . . . Sed05g2278 . Cpe15g00570 Bhi05g01772 Tan02g0739 Cmetu01g1464 . Hepe02g0458 . . Cla02g00473 Cam02g0479 Cec02g0481 Cco02g0486 Clacu02g0483 Cmu02g0478 Cre02g0813 Cone12ag1198 . . . . Csa07g00053 . Cme01g01317 Blo04g00545 . . Bda14g00584 Bpe15g00836 . Bma03g00578 . . . . . Cma19g00705 . Car19g00544 . . . . . . . . . . . . . . . . Lsi11g01152 . Chy01g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011659 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58715 PF01207 Dus 3.10E-50 CL0036 Cco TF