Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0487 ATGGGTGATACTGAAGATGCTCACACTGAGAACATGCGAAATCTTCAATGTTCGTATGGCGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTTCAGTCAAATTTTCTTGCGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCGGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGACATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAACTAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTGTTTTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCAAGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCTCAAATGCCTGGATTGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGGGCCGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCTCCCAAAATGCCTCCCACACCACCTGGCGTTCGCCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCGAAAGAGCGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCCGCTCAACTCACACTTTTACAGAGAGATTCCGTGGGCCTTACAAACCAGAATAATGAACTGAAGTTTCGTCTACAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTTGCTACAACAGAGCTAAATGCGCAGTCTCATCCCTCCAACGGAGTAATGCCCCAATCTTCCATCAATCACCATGGCCTACAGCTTCAGCTTCAGCACCAGCAACAACAACAACAGATCCAGCAGAATGGGAATGCAACCACAAAACCAGAATCCAACCAATAA 1701 45.09 MGDTEDAHTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLADNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFNSSGGLERSTSSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGQENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRAAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHGLQLQLQHQQQQQQIQQNGNATTKPESNQ 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4492821 4495215 - CcPI632755_02g004870.1 Cco02g0487 171244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0487 566 SMART brlzneu 418 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0487 566 MobiDBLite consensus disorder prediction 59 250 - -
Cco02g0487 566 FunFam probable transcription factor PosF21 421 474 - -
Cco02g0487 566 MobiDBLite consensus disorder prediction 289 320 - -
Cco02g0487 566 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0487 566 Coils Coil 501 521 - -
Cco02g0487 566 MobiDBLite consensus disorder prediction 267 342 - -
Cco02g0487 566 MobiDBLite consensus disorder prediction 538 566 - -
Cco02g0487 566 Coils Coil 438 493 - -
Cco02g0487 566 Gene3D - 421 473 - -
Cco02g0487 566 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 555 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco02g0487 566 MobiDBLite consensus disorder prediction 83 115 - -
Cco02g0487 566 MobiDBLite consensus disorder prediction 356 380 - -
Cco02g0487 566 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0487 566 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0487 566 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0487 566 MobiDBLite consensus disorder prediction 181 216 - -
Cco02g0487 566 MobiDBLite consensus disorder prediction 228 250 - -
Cco02g0487 566 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0487 Cco-Chr2:4492821 Cco08g0830 Cco-Chr8:20133291 1.20E-41 dispersed
Cco02g0487 Cco-Chr2:4492821 Cco02g0489 Cco-Chr2:4504526 4.60E-272 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58716 PF00170 bZIP_1 7.50E-09 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0487 - - - 0.0