Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0487 | ATGGGTGATACTGAAGATGCTCACACTGAGAACATGCGAAATCTTCAATGTTCGTATGGCGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTTCAGTCAAATTTTCTTGCGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCGGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGACATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAACTAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTGTTTTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCAAGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCTCAAATGCCTGGATTGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGGGCCGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCTCCCAAAATGCCTCCCACACCACCTGGCGTTCGCCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCGAAAGAGCGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCCGCTCAACTCACACTTTTACAGAGAGATTCCGTGGGCCTTACAAACCAGAATAATGAACTGAAGTTTCGTCTACAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTTGCTACAACAGAGCTAAATGCGCAGTCTCATCCCTCCAACGGAGTAATGCCCCAATCTTCCATCAATCACCATGGCCTACAGCTTCAGCTTCAGCACCAGCAACAACAACAACAGATCCAGCAGAATGGGAATGCAACCACAAAACCAGAATCCAACCAATAA | 1701 | 45.09 | MGDTEDAHTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLADNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFNSSGGLERSTSSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGQENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRAAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHGLQLQLQHQQQQQQIQQNGNATTKPESNQ | 566 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4492821 | 4495215 | - | CcPI632755_02g004870.1 | Cco02g0487 | 171244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0487 | 566 | SMART | brlzneu | 418 | 482 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 59 | 250 | - | - | |
Cco02g0487 | 566 | FunFam | probable transcription factor PosF21 | 421 | 474 | - | - | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 289 | 320 | - | - | |
Cco02g0487 | 566 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 420 | 483 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0487 | 566 | Coils | Coil | 501 | 521 | - | - | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 267 | 342 | - | - | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 538 | 566 | - | - | |
Cco02g0487 | 566 | Coils | Coil | 438 | 493 | - | - | |
Cco02g0487 | 566 | Gene3D | - | 421 | 473 | - | - | |
Cco02g0487 | 566 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 156 | 555 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 83 | 115 | - | - | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 356 | 380 | - | - | |
Cco02g0487 | 566 | SUPERFAMILY | Leucine zipper domain | 422 | 473 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0487 | 566 | Pfam | bZIP transcription factor | 422 | 476 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0487 | 566 | CDD | bZIP_plant_RF2 | 423 | 472 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 181 | 216 | - | - | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 228 | 250 | - | - | |
Cco02g0487 | 566 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0487 | Cco-Chr2:4492821 | Cco08g0830 | Cco-Chr8:20133291 | 1.20E-41 | dispersed | |
Cco02g0487 | Cco-Chr2:4492821 | Cco02g0489 | Cco-Chr2:4504526 | 4.60E-272 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58716 | PF00170 | bZIP_1 | 7.50E-09 | CL0018 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0487 | - | - | - | 0.0 |