Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0489 ATGGGTGATACTGAAGATGCTCGTACTGATAACCTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTGCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAGCAGAAGAATTGGGATACCTCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCCCAGATCCCGGTGTCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCCCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCTTCTACATCGAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGAGCCAATTCTTCGAAGATGGGTGATGCTTTGCCTCCTCGTAAAGCCCATAGGCGTTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGTTCAGGTGGATTGGAGCGATCAACTAGTAGTAAAGAGAATGCGGGAATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAAGCATTGATAACAATTTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGTAGCGGAACAAAAACAGGGGGTGAGAGCAGCGATAATGAAGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAGTGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCCATGGATAGTTTTATGGGCAAGTTACAGTTTGGTGATGAGTCACCGAAAATGCCTCCTACGCCGCCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCGACTCCATTCAGCTTGGAGTTCGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAACGACAAACTTGCGGAGATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATTTTGGCTAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACGCTTCTGCAGCGAGACTCTGTTGGACTTACAAACCAGAATAATGAACTTAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAATGAAGCATTAACTGCGGAGGTTCAGAGATTGAAGCTCACTACAGCCAATATAAACGTGCAATCTCATCCCTCAGACGGGGTAATGGCTCAATCTTCTATGAATCATCACGGACTCCAACTTCAGCTTCAGCAGCAGCAGCAACAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1704 45.07 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRAQHFQSNFLGDNSRRIGIPPCPNSPQIPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQVPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLTTANINVQSHPSDGVMAQSSMNHHGLQLQLQQQQQQQQQHMQQNGSATTKPESNQ 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4504526 4508326 - CcPI632755_02g004890.1 Cco02g0489 171246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0489 567 SMART brlzneu 417 481 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0489 567 Coils Coil 437 492 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 57 249 - -
Cco02g0489 567 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0489 567 MobiDBLite consensus disorder prediction 228 249 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 290 320 - -
Cco02g0489 567 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0489 567 FunFam probable transcription factor PosF21 420 473 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 83 115 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 268 342 - -
Cco02g0489 567 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 555 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco02g0489 567 Gene3D - 420 472 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 355 381 - -
Cco02g0489 567 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0489 567 MobiDBLite consensus disorder prediction 181 216 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 521 567 - -
Cco02g0489 567 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0489 567 MobiDBLite consensus disorder prediction 275 289 - -
Cco02g0489 567 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0489 Cco-Chr2:4504526 Cco08g0830 Cco-Chr8:20133291 6.80E-42 dispersed
Cco02g0487 Cco-Chr2:4492821 Cco02g0489 Cco-Chr2:4504526 4.60E-272 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58717 PF00170 bZIP_1 8.20E-09 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0489 - - - 0.0