Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0498 ATGTCCGTCCCTCAGCATTCATTTCCATCTTTCTACGTTCGACGACGAAAAGCGCAGCAGAGTAGCAGAGGCTTCGGATCAGACCCAACGGCAGAAAAGAAGAAGGGGGAAAAGGGTAATCTTAAAAACGACGGCTTTTGGAGGGATCGCATCGATTTCTTTCTCGAGCAAGTAAGCCATTGCAATCGATATCTGAACCGCATCGCTCTACCTAATGGATACATCGTTTTCGGGAACGGTTTTCTGAAAGGACTGACGATTCCACAATCGGAAGACACCCATGGCTTGCTGGATGGTTACGACATGGAACTGAATCGAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGGAAATGGGGGCGGTTGCTGGAGAGGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGTGAAGAGAAAATTCTTGTTTTAGTAAGGCTGAGACCCTTGAACGAGAAGGAGATTATGATGAATGAAGCTGCAGATTGGGAGTGTATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAGAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATATACCATGAATGGAATTCTTGAATATTCAGTGGCGGATATATTTGATTACATTAGAAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATATAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTAGTCCTCTCAGGCTGCTAGATGACCAGGAGCGAGGGACTATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCACTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAACTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACGACACTTGCTGCTAGTGTGAGTTTTATTGATTTAGCTGGGAGCGAACGTGCAGCTCAAGCATTATCAGCAGGGACGAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTATTGACTCTGGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACACGAATATTACAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGTACATTGAGCCCTGCAAGAAGTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACAACAAAAGCTCAAGTCAACGTGGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTAAGAACTCCTGCCCCTGTTTCGTCCAGTTCTGAATATGCAGCCCTACTGAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAAAGGGATCTCGCTCAATCCCGAGTTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCTCGAGAAAGGATATCAAAACTAGTTATTCCAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATATGGGTGGAAAATCCTTTAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCACTCAGGTCAAAGTGGAATTACAACCGCTCTTGCAATAGCAGAAGATTCCGATGACTGCAAGGAAGTTCAATGCATTGAAATGGGGGAGTCAGTCAGAGACGATGGCTTGTCACCGCTTGCTGCTAACAATGGTGAATTTAGAGGAATGCCTTTTACTAGGTCAAACGATGGAAATATAATAGGTCATGAATTGATATCAACCCCTGTGAATGGGAACAGAGAAGCACACCAGATACAAAATAATTCAACAAATGGTCAACCAGAGCAAAGACTCCATGATGTAAGAAGGATGGACATTAATTCTATGAGTAGTCCCTACCGCGACGATGCATGTTCAAAGGTTGCTGCTGACATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATTTCACTACTGAGCTATCACCTGATAGAGGAGAGACCACCCCTCCTCATGGATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGACTTTGATGGCAGCCTCCCGAGACTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCTGCAGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCTGGGTTGAAGAAAATGAGAAACTCAGAGTGTGGGAAAGAACTTGCTGAGGGGCAGGTTCTGGAGGATGGACAAGAAATAGATTTCTTAAAGAACACAAATTATGTTGGAGGTGAGGCATTGCCAGATGGATTAGTCACATCGGATTGGAACGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAAACTTGCAACGTTTCGATTGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGCGATCCTGCCGATTCCATTTACATGGAAGTAGAGCTTAGGAGACTGACTTTTCTAAAGCAAACATTTTATTACGGCAATGCAGCTATGGATGATGGCCGGAAAGTCTCTTTTTCTTCAAGTACAAGGGATCTTCGTCGCGAGAGAGAAACATTGAGTAAGCTAATCCAGAAGCGATTCTCAGAAGATGAAAGAAAAAGATTGTTCCAGAAGTGGGGAATTGCATTGAATTCGAAACGCCGAAGGCTGCAGCTGGTCAGCCAGTTGTGGAGCGATCCGAAGAACATGAACCACGTAACAGAGAGTGCAGCCATTGTTGCCAAGCTTGTGAAGTTTGCTGAGCAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATTACACCTCCACAAAAGAGTAGATCATTTAGCTGGATAAACAATAGGACTTCTCTTTTGTGA 3153 43.45 MSVPQHSFPSFYVRRRKAQQSSRGFGSDPTAEKKKGEKGNLKNDGFWRDRIDFFLEQVSHCNRYLNRIALPNGYIVFGNGFLKGLTIPQSEDTHGLLDGYDMELNRGGGLLGWEKVWEMGAVAGEELMKLEKMQGINAREEKILVLVRLRPLNEKEIMMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAREIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGHDDVSRKDIKTSYSKLQARDGLEYEGSPSETSSVADFRGRDMGGKSFNNPHYYDGDSDDGKRFLDSHSGQSGITTALAIAEDSDDCKEVQCIEMGESVRDDGLSPLAANNGEFRGMPFTRSNDGNIIGHELISTPVNGNREAHQIQNNSTNGQPEQRLHDVRRMDINSMSSPYRDDACSKVAADMSSSRSLKLARSWSCRANFTTELSPDRGETTPPHGFDKSFPGRPEGFERKLPQLDFDGSLPRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMRNSECGKELAEGQVLEDGQEIDFLKNTNYVGGEALPDGLVTSDWNEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLTFLKQTFYYGNAAMDDGRKVSFSSSTRDLRRERETLSKLIQKRFSEDERKRLFQKWGIALNSKRRRLQLVSQLWSDPKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPQKSRSFSWINNRTSLL 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4620805 4629023 - CcPI632755_02g004980.1 Cco02g0498 171255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0498 1050 SMART kinesin_4 140 472 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 Pfam Kinesin motor domain 148 464 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 MobiDBLite consensus disorder prediction 752 806 - -
Cco02g0498 1050 Coils Coil 473 493 - -
Cco02g0498 1050 Coils Coil 510 544 - -
Cco02g0498 1050 MobiDBLite consensus disorder prediction 790 806 - -
Cco02g0498 1050 MobiDBLite consensus disorder prediction 15 39 - -
Cco02g0498 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 496 IPR027417 -
Cco02g0498 1050 MobiDBLite consensus disorder prediction 566 613 - -
Cco02g0498 1050 Gene3D Kinesin motor domain 134 495 IPR036961 -
Cco02g0498 1050 ProSiteProfiles Kinesin motor domain profile. 142 464 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 PANTHER CENTROMERE PROTEIN E 138 1042 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cco02g0498 1050 PRINTS Kinesin heavy chain signature 328 345 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 PRINTS Kinesin heavy chain signature 414 435 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 PRINTS Kinesin heavy chain signature 219 240 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 PRINTS Kinesin heavy chain signature 364 382 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco02g0498 1050 FunFam Kinesin-like protein 136 495 - -
Cco02g0498 1050 Pfam Domain of unknown function (DUF3490) 873 1032 IPR021881 -
Cco02g0498 1050 CDD KISc_CENP_E 142 464 - -
Cco02g0498 1050 ProSitePatterns Kinesin motor domain signature. 363 374 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0498 K11498 - - csv:101213783 1726.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0498 Cco-Chr2:4620805 Cco08g1849 Cco-Chr8:29485241 1.50E-71 dispersed
Cco02g0498 Cco-Chr2:4620805 Cco02g0507 Cco-Chr2:4706611 1.30E-67 proximal
Cco07g0889 Cco-Chr7:20689380 Cco02g0498 Cco-Chr2:4620805 1.70E-106 transposed
Cco11g0016 Cco-Chr11:200332 Cco02g0498 Cco-Chr2:4620805 1.30E-147 transposed
Cco02g0498 Cco-Chr2:4620805 Cco08g1635 Cco-Chr8:27860982 6.40E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43