Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0503 ATGGAAGCCGAAGAAGATGATTCTTCGTATCATGACCCAAAATCTTCGTTGTATGTTGATGATGGAAACTTAGATGTTAAGTGTGACACCAATCGGGAGCTTCAGAGCAATGAAGAACAGCATTGTGTGTCCAAGTCCTCAATTATGGAAACGAAGTTTTCACCTAATACCGGCGTGGAATCTTTACCACCCAGAGATGCAATTCTTGGGGATGAAATTCTTGCTGTGGATACTTATTCAGAGATGGAGAAGAAGGATTTGGTGGAGGAGACAGAGATAGCAGGGAAGAAGGATTTTCGCAACATTATTGAGGATATGGCGGAAGATTCAGTGAAGTTGGAGATTGAACCTGATATTGCGGAGACGGGGTTATTGGGACAAAGGGTTTTCGCTGATGTGAAAAAAAATACAGGGGTGTCGGAGGAGGAGAGGGCTTTGAGTGAATTTGCAGAAGGTGAGTTGTTACCTGAAATGGTTTTGGTTGGTGTCGCTGAAAATCAGGTTGAGTGCAACGTTTTACTGGCGAATTTTTCAGAGGATACGGTCGTTGAAGGTTCAGCTACAGTTGGCTGTGCAGAGACAAACGAGAAGACGTGCCTGATTGATGTTATGGCTGAGGAAACGCTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTTACTGATGCAACCAATTTGGTGAAGAAGACGGAGGTGGAAGAGAATGCCGATGACCCCAATGATTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTTGGTGTGGAGGAAAGGCAATTAGGTGTCCCGGTGCAGTTGGCAGAGAAATCTGAGTTGAAAGTTAGTTCGGTTGATGGGGCTGTGGTGGAGGGACAGTCGACAAATTTAGCAGACAGAACTGGTGAAACGTTGAAGATGAATGTCTCAAGCACCATTGATGAGGTGGGGGTGACACATTTTGCTGGGGAGATTAGTGAGGCGGTAAATATAGGAAACGCTGAAGACAAGACTATTGAGATGGGCGGAATGTGTGCGTATGACAAGGCTACTGATGTTGCGATGATGGAGAATTTGGCAGATGAGACCCCAGGGATCAAGGGAGTGGAGTTAACAGACTACACTATTGAAGAGTTGAAGATTGAGAACGTGGAAGATAGGGAAGCGGGAGTGCAAGGATTGGGTGTGGCTGATGAGAGTCCCGTGGTTGGGAAGCTTGAGAATATGGCAGATGAGACTGCAGAGGCTGAGGAAGTGCAAGTGACTGACTACACTGCAGAAGACGTACAATTGGAGAATGTAGAAGAAGACAAGACTGTTCAAGGGGAGGACATAGCTATGGCAGAAGAGAGTGCGGAGGCAGATGACATGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGCAAACATGGCATACTTGGTGGAGGAAGCGGAAGCAGCAGAGGAGATTGAGGAGATGGATGTTACAGAAGAGGTGGATGAGCCAAATAAAGGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGTGCCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATCAAAAATGCTGTTATTTTGTGTGTTAGAGGGAACAAAGGCTTCTGCGAGACATGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGGCCAAATCGATTTTAATGACAAAAATAGCTGGGAATTTCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGCCTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGACCTGATTCACCTGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAGAAAAAAAGAGCTAAGAAAAGGTCAAAAGCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTATACCTGATTCTCAAGGGCTATCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAATGGTGATGGAACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGGAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAAAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAGGATGCCCAGACAAATAACCTCCAAGGGAGTGTTGCTGATACCGAATCAAGTCAGTTGGAGGCTGATGGCACTGATGGATTGGGAAAGAATAAGAAAGAGAAAAAACGCAGGGCACGGAAAAAAGGTGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCCATTGATATTCACAACATTAATTTAATTTACTTAAAGCGTAATTTGGTGGAATATCTGATTGAGGATGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAGAAACAAGATTTATATCGGCTGGTTCAAGTTGTTGGTACTAGCAAAGCATCCGAGCCTTATAAAATTGGTAAAAAGATGACCGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCAATTGACATAATCTCAAATCAAGAGTTCACGGAGGAGGAGTGCAAGCGTCTCAGACAAAGCATTAAGTGTGGAATCCTTAACCGTTTGACAGTGGGTGACCTCCAGGAGAGAGCAATGTCGCTTCAAGATGCCAGAGTTAAGGACTGGATGGAAACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAAATGTGTTGAGAAACTACAGCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGAATTGAGGAAATACCAGAAATACATGCTGACCCAAATATGGATCCGAGTCATGAATCAGAAGATGAAGATGAAGCAGATGATAAGAGACGAGGAAACTACACCTTGTCAAGAAGTACAAGCTTTGGCAGGAGGATGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCAAATTTGAATGATTCCTGGAGCGGGACTAGAAACTTTTCTAACACGAATCGGGACTTGAGCAGGAACTTGTCTGTCAAAGGCTTCTCTAACCAAGGAGACGATGCCATTGGTTCTGGTGAAATAATAAACGAAAATTCATGGGGTCAAGGAAGAGAGAGAGATGTTAAGAAAACAAACAAGTGGGACAAACAACAAGTTTCACCTAGTTCAGAAATCCCTGCTAGAAATGCCTCGTCTGGGGCCACATCTGAGTTGTCTTCTGCTGTTCACTTAGTAAATCCAGCAGTATCTCCATCTGTGGGGACTACACAGAATGCTGCTACAGTTAATGAATCAGAGAAGATATGGCGTTATCAGGATCCTTCTGGGAAAGTGCAGGGACCGTTTTCAATGGTGCAACTGCGTAAGTGGAGTAACACAGGTTATTTTCCTGCAGATTTGAGAGTATGGAGAACCTCAGACAAGCAAGAGGACTCCTTACTTTTGACCGATGTCTTAGCGGGAAAGATCCTGAAGGACACTTCATTGACGAGTAACAGTTTCCAAGCACAGTCGAATTCTTCTTCATTTGTTGGGAAGCCTCAGGGAGCCACTTTGCAGTCAGGTATGGATGGTCAGAATGCTGGCACTTCAAATTCACATACTAATCCAACTTCTTATGACCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTCGACCTGCCTCGGCTTCTATAGAAGTCCCCAGGTATTCAGGAGACAGATGGTCTTCTGACCATGGTAATAAGAATTTCACAAGTCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACAAAGGAGCAGCCGTTTCAAGTGGCTGTGTCGTTCATGGAGGCGAAATCACTCTCAGGAGGTGGTAGTGGTTTGCACGGTTCTTCACTTATGCAAGGGTCTGAAAATGACTCGTTGCGCTCACATCCAGTCCGGAATTCATCAGAAAAGGGCATGGGTTTAGGTACTATAAATGCACTCCAAAATCATCATTCTCAGCCAGTAAGGCAATCACCTAGCATTGATGATGCTTTAGTCAATCCAGCTGCAGATATTAAAAGCATTAGCGCAAATCTTCATAGTTTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCAAGGACACGGGTCCGTTCTGAAACGGGAAACAAATATTTCAGAGGCGTGGCAAAATGCACAATCTCTCAAAGCTGAAGCAAACATTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTACGTCGTTCAGTGCAGGAAGTTCAACATCAAGTTTTTCCTCGCCCGGTTTGTCCAGTTTCCCATCCTCCGACCCTTGGCGATCTACACCTCCTATTCCCAGTAACCTGCAACACATGCAGTCTTCAACTCCACCTAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACCGTTCCACGACCAGGTTCTGAGCCTCAGAACCAAGCCTGGGGACCAATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCACCTCCAAATGCTACTGGTATGATGTGGGGAACTGCTGCTCAAAGTTCTGGTCCTGCAGGTACAAACCCAGGTTGGATTGCACCAGGTCAAGGGCCACCAGCAGGAAACAACATTCAAGGATGGCCAGCACACAGCCCAATGCCACCTCCGGTAAATGCAACTCCAGGATGGGTTGCCCCCAATGTTGCACCGATGCCACCTATGAATATGAATCCCAGTTGGCCCGTCCCATCCGTGAATCAGAACATGTGGGGTAATGAACATGGTAAAAATGGGGATAGATTCTCGAACCAAAAGGACGGTGGCTCTCATGGCGGAGATCCTGGGAATGGAGGTAAATCTTGGGGGATGCAACAATCTTTTGGTGGTGGTGGGAATTCTAGGTCTTCTTACAATAGAGTGCAAAAACTTTGCAAATACCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5364 44.99 MEAEEDDSSYHDPKSSLYVDDGNLDVKCDTNRELQSNEEQHCVSKSSIMETKFSPNTGVESLPPRDAILGDEILAVDTYSEMEKKDLVEETEIAGKKDFRNIIEDMAEDSVKLEIEPDIAETGLLGQRVFADVKKNTGVSEEERALSEFAEGELLPEMVLVGVAENQVECNVLLANFSEDTVVEGSATVGCAETNEKTCLIDVMAEETLAETTLFVQDVDVTDATNLVKKTEVEENADDPNDSKDTEVPKQENFGVEERQLGVPVQLAEKSELKVSSVDGAVVEGQSTNLADRTGETLKMNVSSTIDEVGVTHFAGEISEAVNIGNAEDKTIEMGGMCAYDKATDVAMMENLADETPGIKGVELTDYTIEELKIENVEDREAGVQGLGVADESPVVGKLENMADETAEAEEVQVTDYTAEDVQLENVEEDKTVQGEDIAMAEESAEADDMVYLVDEGIGSEETDANMAYLVEEAEAAEEIEEMDVTEEVDEPNKGSSGSKRKRGKNSKAPARVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVMLIEKNEQGNTEKGQIDFNDKNSWEFLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKKRAKKRSKAQAKEMSSPSMPAIPDSQGLSTDNNVEWASKELLEFVMHMKNGDGTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQTNNLQGSVADTESSQLEADGTDGLGKNKKEKKRRARKKGDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKIGKKMTDILLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRAKCVEKLQLLKTPEERQRRIEEIPEIHADPNMDPSHESEDEDEADDKRRGNYTLSRSTSFGRRMREPVSPGKGGSNLNDSWSGTRNFSNTNRDLSRNLSVKGFSNQGDDAIGSGEIINENSWGQGRERDVKKTNKWDKQQVSPSSEIPARNASSGATSELSSAVHLVNPAVSPSVGTTQNAATVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRTSDKQEDSLLLTDVLAGKILKDTSLTSNSFQAQSNSSSFVGKPQGATLQSGMDGQNAGTSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPASASIEVPRYSGDRWSSDHGNKNFTSLPSPTPSSGGTKEQPFQVAVSFMEAKSLSGGGSGLHGSSLMQGSENDSLRSHPVRNSSEKGMGLGTINALQNHHSQPVRQSPSIDDALVNPAADIKSISANLHSLVQSINSRNPPIEAQGHGSVLKRETNISEAWQNAQSLKAEANISSSMPPAQTLHSRWGEMSPAQNAATSFSAGSSTSSFSSPGLSSFPSSDPWRSTPPIPSNLQHMQSSTPPNLPWGMGAPEGQSTVPRPGSEPQNQAWGPMPSGNPNMGWGPTAPPPNATGMMWGTAAQSSGPAGTNPGWIAPGQGPPAGNNIQGWPAHSPMPPPVNATPGWVAPNVAPMPPMNMNPSWPVPSVNQNMWGNEHGKNGDRFSNQKDGGSHGGDPGNGGKSWGMQQSFGGGGNSRSSYNRVQKLCKYHESGHCKKGGTCDYRHK 1787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4675321 4689100 + CcPI632755_02g005030.1 Cco02g0503 171260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1398 1431 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 478 514 - -
Cco02g0503 1787 SUPERFAMILY SWIB/MDM2 domain 740 820 IPR036885 -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1044 1063 - -
Cco02g0503 1787 SUPERFAMILY GYF domain 1208 1270 IPR035445 -
Cco02g0503 1787 ProSiteProfiles Zinc finger C3H1-type profile. 1762 1787 IPR000571 GO:0046872(InterPro)
Cco02g0503 1787 Gene3D - 1219 1273 IPR035445 -
Cco02g0503 1787 ProSiteProfiles SWIB/MDM2 domain profile. 738 821 IPR003121 -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 231 255 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 831 846 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1044 1189 - -
Cco02g0503 1787 ProSiteProfiles GYF domain profile. 1217 1271 IPR003169 GO:0005515(InterPro)
Cco02g0503 1787 MobiDBLite consensus disorder prediction 34 61 - -
Cco02g0503 1787 Pfam GYF domain 1220 1260 IPR003169 GO:0005515(InterPro)
Cco02g0503 1787 SUPERFAMILY FYVE/PHD zinc finger 519 568 IPR011011 -
Cco02g0503 1787 Pfam SWIB/MDM2 domain 746 819 IPR003121 -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1538 1634 - -
Cco02g0503 1787 Pfam Plus-3 domain 884 987 IPR004343 GO:0003677(InterPro)
Cco02g0503 1787 SUPERFAMILY Plus3-like 880 1010 IPR036128 GO:0003677(InterPro)
Cco02g0503 1787 FunFam Zinc finger CCCH domain-containing protein 19 880 1009 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1402 1421 - -
Cco02g0503 1787 FunFam Zinc finger CCCH domain-containing protein 19 513 613 - -
Cco02g0503 1787 ProSiteProfiles Plus3 domain profile. 879 1012 IPR004343 GO:0003677(InterPro)
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1743 1760 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1285 1383 - -
Cco02g0503 1787 Gene3D - 880 1010 IPR036128 GO:0003677(InterPro)
Cco02g0503 1787 SMART gyf_5 1218 1273 IPR003169 GO:0005515(InterPro)
Cco02g0503 1787 Gene3D SWIB/MDM2 domain 734 829 IPR036885 -
Cco02g0503 1787 CDD PHD5_NSD 523 568 - -
Cco02g0503 1787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 614 IPR013083 -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1285 1343 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1538 1588 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1602 1617 - -
Cco02g0503 1787 SMART rtf1 879 989 IPR004343 GO:0003677(InterPro)
Cco02g0503 1787 SMART PHD_3 523 569 IPR001965 -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1102 1135 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1166 1189 - -
Cco02g0503 1787 ProSiteProfiles Zinc finger PHD-type profile. 521 587 IPR019787 -
Cco02g0503 1787 SMART swib_2 739 824 IPR019835 -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1715 1760 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 231 254 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 669 738 - -
Cco02g0503 1787 CDD SWIB-MDM2_like 744 819 - -
Cco02g0503 1787 CDD GYF 1217 1272 IPR003169 GO:0005515(InterPro)
Cco02g0503 1787 MobiDBLite consensus disorder prediction 40 58 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 831 868 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1151 1165 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1 22 - -
Cco02g0503 1787 MobiDBLite consensus disorder prediction 1361 1383 - -
Cco02g0503 1787 CDD Bbox1 569 594 - -
Cco02g0503 1787 ProSitePatterns Zinc finger PHD-type signature. 524 584 IPR019786 -
Cco02g0503 1787 PANTHER UNCHARACTERIZED 243 1786 - GO:0016593(PANTHER)|GO:1990269(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0503 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0503 Cco-Chr2:4675321 Cco07g0954 Cco-Chr7:21927710 2.10E-169 dispersed
Cco02g0503 Cco-Chr2:4675321 Cco10g1957 Cco-Chr10:33136967 6.50E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58719 PF03126 Plus-3 1.30E-24 No_clan Cco TR