Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0508 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAAGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCCGGAAAACACTCTCGATTCTCTTTACTTCACCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACCGGTGTGAAGCTTTCTTCGACTTGTTATTCGTATCAAACATCTTCGTCCTCCAATGGCTGTGATCCCGCCCTGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGTCGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTCTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTGGAAATTTTAGGTAAAAATTCTCAAATTATTACTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAATTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 44.0 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSYQTSSSSNGCDPALDVKTGSSNACSKRPKMVANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEILGFGNQNLERQQESLSTLKNTLEILGKNSQIITTRCWNGILGISMKICKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4723704 4724800 - CcPI632755_02g005080.1 Cco02g0508 171265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0508 271 CDD Bbox1_BBX-like 58 100 IPR049808 -
Cco02g0508 271 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Cco02g0508 271 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Cco02g0508 271 Coils Coil 218 241 - -
Cco02g0508 271 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cco02g0508 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cco02g0508 271 Gene3D Classic Zinc Finger 1 100 - -
Cco02g0508 271 MobiDBLite consensus disorder prediction 145 164 - -
Cco02g0508 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 218 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco02g0508 271 FunFam B-box zinc finger protein 21 1 98 - -
Cco02g0508 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco02g0508 271 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco02g0508 271 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0508 Cco-Chr2:4723704 Cco09g1456 Cco-Chr9:19798289 1.10E-34 dispersed
Cco07g1085 Cco-Chr7:24391664 Cco02g0508 Cco-Chr2:4723704 9.20E-30 transposed
Cco11g0413 Cco-Chr11:4270059 Cco02g0508 Cco-Chr2:4723704 2.10E-48 wgd
Cco02g0508 Cco-Chr2:4723704 Cco08g1639 Cco-Chr8:27887923 2.40E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58720 PF00643 zf-B_box 3.30E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0508 - - - 0.0